millironx/haplotyper-battle-royale
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fix: Remove undefined POSIX behavior

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This commit is contained in:
Thomas A. Christensen II 2023-08-09 23:39:02 -05:00
parent 054c1853f5
commit eb7cd4e382
Signed by: millironx
GPG key ID: 09335146883990B9
1 changed files with 4 additions and 2 deletions
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6
modules/viquas/viquas
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@ -29,7 +29,8 @@ fi
REFERENCE_FILE=$(basename "${1}") REFERENCE_FILE=$(basename "${1}")
BAM_FILE=$(basename "${2}") BAM_FILE=$(basename "${2}")
cp -r /viquas/{viquas_files,ViQuaS.R} . cp -r /viquas/viquas_files .
cp /viquas/ViQuaS.R .
case $NUM_ARGS in case $NUM_ARGS in
2) 2)
@ -44,4 +45,5 @@ case $NUM_ARGS in
exit 1 exit 1
esac esac
rm -rf ./{viquas_files,ViQuaS.R} rm -rf ./viquas_files
rm ViQuaS.R