millironx/haplotyper-battle-royale
1
0
Fork 0
Code Issues Pull requests Releases Packages Activity

refactor: Change output file name of EFETCH

Browse source
This commit is contained in:
Thomas A. Christensen II 2023-09-23 15:39:21 -05:00
parent b1ee784dac
commit ec4414184b
Signed by: millironx
GPG key ID: 09335146883990B9
1 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
modules/efetch/main.nf
View file

@ -9,7 +9,7 @@ process EFETCH {
publishDir "results", mode: 'copy' publishDir "results", mode: 'copy'
output: output:
path 'idv4.fasta' path 'reference.fasta'
script: script:
""" """
@ -18,6 +18,6 @@ process EFETCH {
-query "${genome}" \\ -query "${genome}" \\
| efetch \\ | efetch \\
-format fasta \\ -format fasta \\
> idv4.fasta > reference.fasta
""" """
} }