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095aff629d
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refactor: Replace performance directives with process label
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2023-09-26 08:49:09 -05:00 |
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517b8eb66b
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feat: Add method/prefix tag to HAPLINK_SEQUENCES
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2023-09-26 08:49:08 -05:00 |
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5162f649d8
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refactor: Move HAPLINK_SEQUENCES module to its own file
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2023-09-26 08:49:07 -05:00 |
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52ca8f1528
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refactor: Replace in-workflow HAPLINK processes with imported modules
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2023-09-26 08:49:06 -05:00 |
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47500bc986
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feat: Add new HAPLINK_HAPLOTYPES module
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2023-09-26 08:49:05 -05:00 |
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abfed449f6
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feat: Add prefix tag to SHORAH_SHOTGUN
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2023-09-26 08:49:03 -05:00 |
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db0255c54a
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refactor: Move SHORAH_SHOTGUN to its own file
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2023-09-26 08:49:02 -05:00 |
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f6111f27c2
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feat: Add prefix tag to SHORAH_AMPLICON
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2023-09-23 16:09:47 -05:00 |
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dbea6fb30a
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refactor: Move SHORAH_AMPLICON to its own file
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2023-09-23 16:09:21 -05:00 |
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89323bf2c6
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refactor: Replace MINIMAP2 performance directives with process label
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2023-09-23 16:06:12 -05:00 |
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b08d9df6a9
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feat: Add prefix tag to MINIMAP2
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2023-09-23 16:05:29 -05:00 |
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a9aa590f00
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refactor: Move MINIMAP2 module to separate file
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2023-09-23 16:05:02 -05:00 |
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d12a8b77d8
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refactor: Replace NANOFILT performance directives with process label
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2023-09-23 15:45:34 -05:00 |
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461a4b64a3
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feat: Add prefix tag to NANOFILT module
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2023-09-23 15:44:40 -05:00 |
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f157b0395e
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refactor: Move NANOFILT module to its own file
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2023-09-23 15:44:08 -05:00 |
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0e822c2729
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feat: Add genome tag to EFETCH
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2023-09-23 15:43:10 -05:00 |
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ec4414184b
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refactor: Change output file name of EFETCH
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2023-09-23 15:39:21 -05:00 |
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b1ee784dac
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refactor: Make reference genome an input for EFETCH
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2023-09-23 15:38:55 -05:00 |
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7a3744a3d3
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refactor: Replace EFETCH performance directives with process label
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2023-09-23 15:36:01 -05:00 |
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18875ae1a6
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refactor: Move EFETCH module to its own file
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2023-09-23 15:34:27 -05:00 |
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2c755dcd4f
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refactor: Replace hard-coded performance directives with process label
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2023-09-23 15:27:05 -05:00 |
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cc433aaffe
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feat: Add container directive to HAPLINK_VARIANTS
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2023-09-23 15:23:45 -05:00 |
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a223b87464
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feat: Add tag directive to HAPLINK_VARIANTS module
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2023-09-23 15:22:13 -05:00 |
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2829d51533
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refactor: Move HAPLINK_VARIANTS module to its own folder
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2023-09-23 15:21:26 -05:00 |
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a91632a883
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feat: Force containerized R environments
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2023-08-19 14:36:51 -05:00 |
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1e741e1db1
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fix: Copy over every directory in @INC
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2023-08-10 23:17:21 -05:00 |
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eb7cd4e382
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fix: Remove undefined POSIX behavior
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2023-08-09 23:39:02 -05:00 |
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054c1853f5
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fix: Change permissions on ViQuaS install
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2023-08-09 23:36:24 -05:00 |
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a4478cdf7f
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fix: Add ps to final container
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2023-08-09 23:25:43 -05:00 |
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ebcbb53cb1
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refactor: Switch to multi-stage build
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2023-08-09 23:21:33 -05:00 |
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58759e3314
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fix: Add user permissions to ViQuas folder
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2023-08-09 18:17:45 -05:00 |
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0997616190
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refactor: Add container declaration to ViQuas module
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2023-08-09 18:09:31 -05:00 |
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d0b25c41b9
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fix: Add BAM index to ViQuas input
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2023-08-09 17:53:07 -05:00 |
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9198d1186c
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feat: Add ViQuas to main pipeline
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2023-08-09 16:09:55 -05:00 |
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1e20488409
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feat: Add ViQuas module
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2023-08-09 16:07:54 -05:00 |
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108fb0dc5b
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refactor: Minimize Dockerfile layers
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2023-08-09 16:02:46 -05:00 |
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a1d0348697
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feat: Create working Dockerfile for ViQuas
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2023-08-09 15:28:35 -05:00 |
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ad10d46c87
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feat: Add SHORAH_SHOTGUN process
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2023-06-08 18:12:23 -05:00 |
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feb051fc07
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feat: Add SHORAH_AMPLICON process
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2023-06-08 18:11:33 -05:00 |
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58b18cc2c9
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chore: Add gitignore
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2023-06-08 17:56:39 -05:00 |
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7743bf31c6
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feat: Import HapLink validation script
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2023-06-08 17:55:57 -05:00 |
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