34 commits

Author	SHA1	Message	Date
Thomas A. Christensen II	095aff629d	refactor: Replace performance directives with process label	2023-09-26 08:49:09 -05:00
Thomas A. Christensen II	517b8eb66b	feat: Add method/prefix tag to HAPLINK_SEQUENCES	2023-09-26 08:49:08 -05:00
Thomas A. Christensen II	5162f649d8	refactor: Move HAPLINK_SEQUENCES module to its own file	2023-09-26 08:49:07 -05:00
Thomas A. Christensen II	47500bc986	feat: Add new HAPLINK_HAPLOTYPES module	2023-09-26 08:49:05 -05:00
Thomas A. Christensen II	abfed449f6	feat: Add prefix tag to SHORAH_SHOTGUN	2023-09-26 08:49:03 -05:00
Thomas A. Christensen II	db0255c54a	refactor: Move SHORAH_SHOTGUN to its own file	2023-09-26 08:49:02 -05:00
Thomas A. Christensen II	f6111f27c2	feat: Add prefix tag to SHORAH_AMPLICON	2023-09-23 16:09:47 -05:00
Thomas A. Christensen II	dbea6fb30a	refactor: Move SHORAH_AMPLICON to its own file	2023-09-23 16:09:21 -05:00
Thomas A. Christensen II	89323bf2c6	refactor: Replace MINIMAP2 performance directives with process label	2023-09-23 16:06:12 -05:00
Thomas A. Christensen II	b08d9df6a9	feat: Add prefix tag to MINIMAP2	2023-09-23 16:05:29 -05:00
Thomas A. Christensen II	a9aa590f00	refactor: Move MINIMAP2 module to separate file	2023-09-23 16:05:02 -05:00
Thomas A. Christensen II	d12a8b77d8	refactor: Replace NANOFILT performance directives with process label	2023-09-23 15:45:34 -05:00
Thomas A. Christensen II	461a4b64a3	feat: Add prefix tag to NANOFILT module	2023-09-23 15:44:40 -05:00
Thomas A. Christensen II	f157b0395e	refactor: Move NANOFILT module to its own file	2023-09-23 15:44:08 -05:00
Thomas A. Christensen II	0e822c2729	feat: Add genome tag to EFETCH	2023-09-23 15:43:10 -05:00
Thomas A. Christensen II	ec4414184b	refactor: Change output file name of EFETCH	2023-09-23 15:39:21 -05:00
Thomas A. Christensen II	b1ee784dac	refactor: Make reference genome an input for EFETCH	2023-09-23 15:38:55 -05:00
Thomas A. Christensen II	7a3744a3d3	refactor: Replace EFETCH performance directives with process label	2023-09-23 15:36:01 -05:00
Thomas A. Christensen II	18875ae1a6	refactor: Move EFETCH module to its own file	2023-09-23 15:34:27 -05:00
Thomas A. Christensen II	2c755dcd4f	refactor: Replace hard-coded performance directives with process label	2023-09-23 15:27:05 -05:00
Thomas A. Christensen II	cc433aaffe	feat: Add container directive to HAPLINK_VARIANTS	2023-09-23 15:23:45 -05:00
Thomas A. Christensen II	a223b87464	feat: Add tag directive to HAPLINK_VARIANTS module	2023-09-23 15:22:13 -05:00
Thomas A. Christensen II	2829d51533	refactor: Move HAPLINK_VARIANTS module to its own folder	2023-09-23 15:21:26 -05:00
Thomas A. Christensen II	1e741e1db1	fix: Copy over every directory in @INC	2023-08-10 23:17:21 -05:00
Thomas A. Christensen II	eb7cd4e382	fix: Remove undefined POSIX behavior	2023-08-09 23:39:02 -05:00
Thomas A. Christensen II	054c1853f5	fix: Change permissions on ViQuaS install	2023-08-09 23:36:24 -05:00
Thomas A. Christensen II	a4478cdf7f	fix: Add ps to final container	2023-08-09 23:25:43 -05:00
Thomas A. Christensen II	ebcbb53cb1	refactor: Switch to multi-stage build	2023-08-09 23:21:33 -05:00
Thomas A. Christensen II	58759e3314	fix: Add user permissions to ViQuas folder	2023-08-09 18:17:45 -05:00
Thomas A. Christensen II	0997616190	refactor: Add container declaration to ViQuas module	2023-08-09 18:09:31 -05:00
Thomas A. Christensen II	d0b25c41b9	fix: Add BAM index to ViQuas input	2023-08-09 17:53:07 -05:00
Thomas A. Christensen II	1e20488409	feat: Add ViQuas module	2023-08-09 16:07:54 -05:00
Thomas A. Christensen II	108fb0dc5b	refactor: Minimize Dockerfile layers	2023-08-09 16:02:46 -05:00
Thomas A. Christensen II	a1d0348697	feat: Create working Dockerfile for ViQuas	2023-08-09 15:28:35 -05:00