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Author	SHA1	Message	Date
Thomas A. Christensen II	0e822c2729	feat: Add genome tag to EFETCH	2023-09-23 15:43:10 -05:00
Thomas A. Christensen II	ec4414184b	refactor: Change output file name of EFETCH	2023-09-23 15:39:21 -05:00
Thomas A. Christensen II	b1ee784dac	refactor: Make reference genome an input for EFETCH	2023-09-23 15:38:55 -05:00
Thomas A. Christensen II	7a3744a3d3	refactor: Replace EFETCH performance directives with process label	2023-09-23 15:36:01 -05:00
Thomas A. Christensen II	18875ae1a6	refactor: Move EFETCH module to its own file	2023-09-23 15:34:27 -05:00
Thomas A. Christensen II	2c755dcd4f	refactor: Replace hard-coded performance directives with process label	2023-09-23 15:27:05 -05:00
Thomas A. Christensen II	cc433aaffe	feat: Add container directive to HAPLINK_VARIANTS	2023-09-23 15:23:45 -05:00
Thomas A. Christensen II	a223b87464	feat: Add tag directive to HAPLINK_VARIANTS module	2023-09-23 15:22:13 -05:00
Thomas A. Christensen II	2829d51533	refactor: Move HAPLINK_VARIANTS module to its own folder	2023-09-23 15:21:26 -05:00
Thomas A. Christensen II	a91632a883	feat: Force containerized R environments	2023-08-19 14:36:51 -05:00
Thomas A. Christensen II	1e741e1db1	fix: Copy over every directory in @INC	2023-08-10 23:17:21 -05:00
Thomas A. Christensen II	eb7cd4e382	fix: Remove undefined POSIX behavior	2023-08-09 23:39:02 -05:00
Thomas A. Christensen II	054c1853f5	fix: Change permissions on ViQuaS install	2023-08-09 23:36:24 -05:00
Thomas A. Christensen II	a4478cdf7f	fix: Add ps to final container	2023-08-09 23:25:43 -05:00
Thomas A. Christensen II	ebcbb53cb1	refactor: Switch to multi-stage build	2023-08-09 23:21:33 -05:00
Thomas A. Christensen II	58759e3314	fix: Add user permissions to ViQuas folder	2023-08-09 18:17:45 -05:00
Thomas A. Christensen II	0997616190	refactor: Add container declaration to ViQuas module	2023-08-09 18:09:31 -05:00
Thomas A. Christensen II	d0b25c41b9	fix: Add BAM index to ViQuas input	2023-08-09 17:53:07 -05:00
Thomas A. Christensen II	9198d1186c	feat: Add ViQuas to main pipeline	2023-08-09 16:09:55 -05:00
Thomas A. Christensen II	1e20488409	feat: Add ViQuas module	2023-08-09 16:07:54 -05:00
Thomas A. Christensen II	108fb0dc5b	refactor: Minimize Dockerfile layers	2023-08-09 16:02:46 -05:00
Thomas A. Christensen II	a1d0348697	feat: Create working Dockerfile for ViQuas	2023-08-09 15:28:35 -05:00
Thomas A. Christensen II	ad10d46c87	feat: Add SHORAH_SHOTGUN process	2023-06-08 18:12:23 -05:00
Thomas A. Christensen II	feb051fc07	feat: Add SHORAH_AMPLICON process	2023-06-08 18:11:33 -05:00
Thomas A. Christensen II	58b18cc2c9	chore: Add gitignore	2023-06-08 17:56:39 -05:00
Thomas A. Christensen II	7743bf31c6	feat: Import HapLink validation script	2023-06-08 17:55:57 -05:00