millironx/haplotyper-battle-royale
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19 commits

Author SHA1 Message Date
Thomas A. Christensen II
355ce9a00a
feat: Add SHORAH processes to pipeline 2023-09-26 08:49:55 -05:00
Thomas A. Christensen II
444001b499
feat: Add QUASIRECOMB to pipeline 2023-09-26 08:49:54 -05:00
Thomas A. Christensen II
5cc8867799
feat: Add PREDICTHAPLO to pipeline 2023-09-26 08:49:24 -05:00
Thomas A. Christensen II
d8fee48c28
feat: Add CliqueSNV to pipeline 2023-09-26 08:49:22 -05:00
Thomas A. Christensen II
5ab64a8fea
feat: Add CliqueSNV haplotype calling to pipeline 2023-09-26 08:49:13 -05:00
Thomas A. Christensen II
002bd44975
refactor: Change output directory to match haplotypes 2023-09-26 08:49:10 -05:00
Thomas A. Christensen II
5162f649d8
refactor: Move HAPLINK_SEQUENCES module to its own file 2023-09-26 08:49:07 -05:00
Thomas A. Christensen II
52ca8f1528
refactor: Replace in-workflow HAPLINK processes with imported modules 2023-09-26 08:49:06 -05:00
Thomas A. Christensen II
db0255c54a
refactor: Move SHORAH_SHOTGUN to its own file 2023-09-26 08:49:02 -05:00
Thomas A. Christensen II
dbea6fb30a
refactor: Move SHORAH_AMPLICON to its own file 2023-09-23 16:09:21 -05:00
Thomas A. Christensen II
a9aa590f00
refactor: Move MINIMAP2 module to separate file 2023-09-23 16:05:02 -05:00
Thomas A. Christensen II
f157b0395e
refactor: Move NANOFILT module to its own file 2023-09-23 15:44:08 -05:00
Thomas A. Christensen II
b1ee784dac
refactor: Make reference genome an input for EFETCH 2023-09-23 15:38:55 -05:00
Thomas A. Christensen II
18875ae1a6
refactor: Move EFETCH module to its own file 2023-09-23 15:34:27 -05:00
Thomas A. Christensen II
2829d51533
refactor: Move HAPLINK_VARIANTS module to its own folder 2023-09-23 15:21:26 -05:00
Thomas A. Christensen II
9198d1186c
feat: Add ViQuas to main pipeline 2023-08-09 16:09:55 -05:00
Thomas A. Christensen II
ad10d46c87
feat: Add SHORAH_SHOTGUN process 2023-06-08 18:12:23 -05:00
Thomas A. Christensen II
feb051fc07
feat: Add SHORAH_AMPLICON process 2023-06-08 18:11:33 -05:00
Thomas A. Christensen II
7743bf31c6
feat: Import HapLink validation script 2023-06-08 17:55:57 -05:00