23 lines
804 B
JSON
23 lines
804 B
JSON
{
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"$schema": "http://json-schema.org/draft-07/schema",
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"$id": "https://raw.githubusercontent.com/nf-core/taxprofiler/master/assets/schema_input.json",
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"title": "haplotyper battle royale pipeline - params.input schema",
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"description": "Schema for the file provided with params.input",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"sample": {
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"type": "string",
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"pattern": "^\\S+$",
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"errorMessage": "Sample name must be provided and cannot contain spaces"
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},
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"sra": {
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"type": "string",
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"pattern": "^(((SR|ER|DR)[APRSX])|(SAM(N|EA|D))|(PRJ(NA|EB|DB))|(GS[EM])|(syn))(\\d+)$",
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"errorMessage": "Please provide a valid SRA, ENA, DDBJ or GEO identifier"
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}
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},
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"required": ["sample", "sra"]
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}
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}
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