mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-23 00:39:56 +00:00
27 lines
810 B
Text
27 lines
810 B
Text
|
// Profile config names for nf-core/configs
|
||
|
|
|
||
|
|
params {
|
||
|
|
// Specific nf-core/configs params
|
||
|
|
config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
|
||
|
|
config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'
|
||
|
|
config_profile_url = 'https://ki.se/forskning/barntumorbanken'
|
||
|
|
|
||
|
|
// Specific nf-core/sarek configs params
|
||
|
|
max_memory = 752.GB
|
||
|
|
max_cpus = 46
|
||
|
|
max_time = 72.h
|
||
|
|
|
||
|
|
// Specific nf-core/sarek params
|
||
|
|
annotation_cache = true
|
||
|
|
pon = '/data1/PON/vcfs/BTB.PON.vcf.gz'
|
||
|
|
pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
|
||
|
|
snpEff_cache = '/data1/cache/snpEff/'
|
||
|
|
vep_cache = '/data1/cache/VEP/'
|
||
|
|
}
|
||
|
|
|
||
|
|
// Specific nf-core/sarek configuration
|
||
|
|
withLabel:sentieon {
|
||
|
|
module = {params.sentieon ? 'sentieon/201808.05' : ''}
|
||
|
|
container = {params.sentieon ? '' : 'nfcore/sarek:dev'}
|
||
|
|
}
|