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26 lines
810 B
Text
26 lines
810 B
Text
// Profile config names for nf-core/configs
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params {
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// Specific nf-core/configs params
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config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
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config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'
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config_profile_url = 'https://ki.se/forskning/barntumorbanken'
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// Specific nf-core/sarek configs params
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max_memory = 752.GB
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max_cpus = 46
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max_time = 72.h
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// Specific nf-core/sarek params
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annotation_cache = true
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pon = '/data1/PON/vcfs/BTB.PON.vcf.gz'
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pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
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snpEff_cache = '/data1/cache/snpEff/'
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vep_cache = '/data1/cache/VEP/'
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}
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// Specific nf-core/sarek configuration
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withLabel:sentieon {
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module = {params.sentieon ? 'sentieon/201808.05' : ''}
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container = {params.sentieon ? '' : 'nfcore/sarek:dev'}
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}
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