2019-09-22 14:45:09 +00:00
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'CLIP BATCH ENVIRONMENT (CBE) cluster profile provided by nf-core/configs'
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config_profile_contact = 'Patrick Hüther (@phue)'
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2021-03-10 10:26:01 +00:00
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config_profile_url = 'https://clip.science'
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2019-09-22 14:45:09 +00:00
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}
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process {
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executor = 'slurm'
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2019-10-27 19:44:08 +00:00
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queue = { task.memory <= 170.GB ? 'c' : 'm' }
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2021-01-15 11:55:46 +00:00
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module = 'anaconda3/2019.10'
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2021-06-17 09:12:36 +00:00
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// --signal option will be handled by nextflow after 21.10.0 release (see https://github.com/nextflow-io/nextflow/issues/2163)
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2021-09-22 09:54:27 +00:00
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clusterOptions = { '--signal B:USR2 ' << ( (queue == 'c' & task.time <= 1.h) ? '--qos rapid' : ( task.time <= 8.h ? '--qos short': ( task.time <= 48.h ? '--qos medium' : '--qos long' ) ) ) }
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2019-09-22 14:45:09 +00:00
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}
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2019-11-26 13:22:16 +00:00
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singularity {
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enabled = true
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2020-03-05 15:34:20 +00:00
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cacheDir = '/resources/containers'
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2019-11-26 13:22:16 +00:00
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}
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2019-09-22 14:45:09 +00:00
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params {
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2019-10-27 19:44:08 +00:00
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params.max_time = 14.d
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2019-09-22 14:45:09 +00:00
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params.max_cpus = 36
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2021-08-27 12:01:34 +00:00
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params.max_memory = 1800.GB
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2019-11-26 13:22:16 +00:00
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igenomes_base = '/resources/references/igenomes'
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}
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