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nf-configs/conf/pipeline/viralrecon/eddie.config

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env {
BLASTDB_LMDB_MAP_SIZE=100000000
}
2021-07-21 11:10:43 +00:00
process {
withName : '.*PICARD.*' {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName : '.*SNPEFF.*' {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
}