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nf-configs/conf/mpcdf.config

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params {
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config_profile_description = 'MPCDF HPC profiles (unoffically) provided by nf-core/configs.'
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config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://www.mpcdf.mpg.de/services/computing'
}
profiles {
cobra {
// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
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// To create common cache dir
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process {
beforeScript = 'module load anaconda/3/2020.02'
executor = 'slurm'
}
executor {
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queueSize = 8
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}
params {
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config_profile_description = 'MPCDF cobra profile (unofficially) provided by nf-core/configs.'
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max_memory = 725.GB
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max_cpus = 80
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max_time = 24.h
}
}
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raven {
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// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
// to create common cache dir
process {
beforeScript = 'module load anaconda/3/2020.02'
executor = 'slurm'
}
executor {
queueSize = 8
}
params {
config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.'
max_memory = 368.GB
max_cpus = 192
max_time = 24.h
}
}
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}