2020-09-03 14:11:56 -04:00
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params {
|
2020-09-03 14:24:11 -04:00
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config_profile_description = 'MPCDF HPC profiles (unoffically) provided by nf-core/configs.'
|
2020-09-03 14:11:56 -04:00
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_url = 'https://www.mpcdf.mpg.de/services/computing'
|
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|
}
|
|
|
|
|
|
|
|
|
|
|
|
profiles {
|
|
|
|
cobra {
|
|
|
|
// Does not have singularity! Conda module must be used, but it is
|
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|
|
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
|
2020-10-15 08:22:35 -04:00
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|
|
// To create common cache dir
|
2020-09-03 14:11:56 -04:00
|
|
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|
|
|
|
process {
|
|
|
|
beforeScript = 'module load anaconda/3/2020.02'
|
|
|
|
executor = 'slurm'
|
|
|
|
}
|
|
|
|
|
|
|
|
executor {
|
2020-09-03 14:24:11 -04:00
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|
queueSize = 8
|
2020-09-03 14:11:56 -04:00
|
|
|
}
|
|
|
|
|
|
|
|
params {
|
2020-10-15 08:22:35 -04:00
|
|
|
config_profile_description = 'MPCDF cobra profile (unofficially) provided by nf-core/configs.'
|
2020-09-15 13:53:27 -04:00
|
|
|
max_memory = 725.GB
|
2020-09-16 04:21:42 -04:00
|
|
|
max_cpus = 80
|
2020-09-03 14:11:56 -04:00
|
|
|
max_time = 24.h
|
|
|
|
}
|
|
|
|
}
|
2020-10-22 04:42:46 -04:00
|
|
|
raven {
|
2020-10-15 08:22:35 -04:00
|
|
|
// Does not have singularity! Conda module must be used, but it is
|
|
|
|
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
|
|
|
|
// to create common cache dir
|
|
|
|
|
|
|
|
process {
|
|
|
|
beforeScript = 'module load anaconda/3/2020.02'
|
|
|
|
executor = 'slurm'
|
|
|
|
}
|
|
|
|
|
|
|
|
executor {
|
|
|
|
queueSize = 8
|
|
|
|
}
|
|
|
|
|
|
|
|
params {
|
|
|
|
config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.'
|
|
|
|
max_memory = 368.GB
|
|
|
|
max_cpus = 192
|
|
|
|
max_time = 24.h
|
|
|
|
}
|
|
|
|
}
|
2020-10-22 04:42:46 -04:00
|
|
|
}
|