1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-09-21 22:12:03 +00:00
nf-configs/conf/mpcdf.config

52 lines
1.5 KiB
Text
Raw Normal View History

2020-09-03 18:11:56 +00:00
params {
2020-09-03 18:24:11 +00:00
config_profile_description = 'MPCDF HPC profiles (unoffically) provided by nf-core/configs.'
2020-09-03 18:11:56 +00:00
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://www.mpcdf.mpg.de/services/computing'
}
profiles {
cobra {
// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
2020-10-15 12:22:35 +00:00
// To create common cache dir
2020-09-03 18:11:56 +00:00
process {
beforeScript = 'module load anaconda/3/2020.02'
executor = 'slurm'
}
executor {
2020-09-03 18:24:11 +00:00
queueSize = 8
2020-09-03 18:11:56 +00:00
}
params {
2020-10-15 12:22:35 +00:00
config_profile_description = 'MPCDF cobra profile (unofficially) provided by nf-core/configs.'
2020-09-15 17:53:27 +00:00
max_memory = 725.GB
2020-09-16 08:21:42 +00:00
max_cpus = 80
2020-09-03 18:11:56 +00:00
max_time = 24.h
}
}
2020-10-22 08:42:46 +00:00
raven {
2020-10-15 12:22:35 +00:00
// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
// to create common cache dir
process {
beforeScript = 'module load anaconda/3/2020.02'
executor = 'slurm'
}
executor {
queueSize = 8
}
params {
config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.'
max_memory = 368.GB
max_cpus = 192
max_time = 24.h
}
}
2020-10-22 08:42:46 +00:00
}