millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-25 01:19:54 +00:00
Code Issues Releases Packages Activity

Started docs for mpcdf

Browse source
This commit is contained in:
James A. Fellows Yates 2020-09-03 20:21:49 +02:00 committed by GitHub
parent 42a1a15970
commit 0501ae4c1a
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 22 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

22
docs/mpcdf.md Normal file
View file

@ -0,0 +1,22 @@
# nf-core/configs: MPCDF Configuration
All nf-core pipelines have been successfully configured for use on the HPCs at [Max Planck Computing and Data Facility](https://www.mpcdf.mpg.de/).
> :warning: these profiles are not officially supported by the MPCDF.
To run Nextflow, the `jdk` module must be loaded. To use the nf-core profile(s), run the pipeline with `-profile <cluster>,mpcdf`.
Currently the following clusters are supported: cobra, draco* (* coming soon)
>NB: Nextflow will need to submit the jobs via SLURM to the clusters and as such the commands above will have to be executed on one of the head nodes. Check the [MPCDF documentation](https://www.mpcdf.mpg.de/services/computing).
# cobra
Cobra does not currently support singularity, therefore the anaconda/module should be loaded for use.
Due to this, we also recommend setting the `$NXF_CONDA_CACHEDIR` to a location of your choice to store all environments (so to prevent nextflow building the environment on every run).
To use: `-profile cobra,mpcdf`
# draco