Update crukmi.config

Fix the singularity cache dir and add process_single.
master
Simon Pearce 2 years ago committed by GitHub
parent 0d4ecaeb6d
commit 17c3767fef
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@ -5,11 +5,8 @@ params {
config_profile_url = 'http://scicom.picr.man.ac.uk/projects/user-support/wiki'
}
env {
SINGULARITY_CACHEDIR = '/lmod/nextflow_software'
}
singularity {
cacheDir = '/lmod/nextflow_software'
enabled = true
autoMounts = true
}
@ -22,6 +19,11 @@ process {
maxErrors = '-1'
maxRetries = 3
withLabel:process_single {
cpus = { check_max( 1 * task.attempt, 'cpus' ) }
memory = { check_max( 5.GB * task.attempt, 'memory' ) }
}
withLabel:process_low {
cpus = { check_max( 1 * task.attempt, 'cpus' ) }
memory = { check_max( 5.GB * task.attempt, 'memory' ) }

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