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docs(sysbio): Add rnaseq specific docs

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Edmund Miller 2021-06-17 08:36:24 -05:00
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conf/pipeline/rnaseq/utd_sysbio.config
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@ -2,7 +2,6 @@ params {
config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs' config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs'
config_profile_contact = 'Edmund Miller(@emiller88)' config_profile_contact = 'Edmund Miller(@emiller88)'
config_profile_url = 'http://docs.oithpc.utdallas.edu/' config_profile_url = 'http://docs.oithpc.utdallas.edu/'
singularity_cache_dir = '/scratch/applied-genomics/singularity'
} }
process { process {

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docs/pipeline/rnaseq/utd_sysbio.md Normal file
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# nf-core/configs: UTD sysbio rnaseq specific configuration
Extra specific configuration for rnaseq pipeline
## Usage
To use, run the pipeline with `-profile sysbio`.
This will download and launch the eager specific [`utd_sysbio.config`](../../../conf/pipeline/rnaseq/utd_sysbio.config) which has been pre-configured with a setup suitable for the shh cluster.
Example: `nextflow run nf-core/rnaseq -profile sysbio`
## rnaseq specific configurations for UTD sysbio
Specific configurations for UTD Sysbio has been made for rnaseq.
### General profiles
<!-- TODO -->
### Contextual profiles
<!-- TODO -->