millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-25 01:19:54 +00:00
Code Issues Releases Packages Activity

docs(sysbio): Add rnaseq specific docs

Browse source
This commit is contained in:
Edmund Miller 2021-06-17 08:36:24 -05:00
parent e35c5fd1d8
commit 21e1037e0c
No known key found for this signature in database
GPG key ID: BD387FF7BC10AA9D
2 changed files with 23 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
conf/pipeline/rnaseq/utd_sysbio.config
View file

@ -2,7 +2,6 @@ params {
config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs'
config_profile_contact = 'Edmund Miller(@emiller88)'
config_profile_url = 'http://docs.oithpc.utdallas.edu/'
singularity_cache_dir = '/scratch/applied-genomics/singularity'
}
process {

23
docs/pipeline/rnaseq/utd_sysbio.md Normal file
View file

@ -0,0 +1,23 @@
# nf-core/configs: UTD sysbio rnaseq specific configuration
Extra specific configuration for rnaseq pipeline
## Usage
To use, run the pipeline with `-profile sysbio`.
This will download and launch the eager specific [`utd_sysbio.config`](../../../conf/pipeline/rnaseq/utd_sysbio.config) which has been pre-configured with a setup suitable for the shh cluster.
Example: `nextflow run nf-core/rnaseq -profile sysbio`
## rnaseq specific configurations for UTD sysbio
Specific configurations for UTD Sysbio has been made for rnaseq.
### General profiles
<!-- TODO -->
### Contextual profiles
<!-- TODO -->