mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-18 09:18:18 +00:00
fix(ganymede): Add process resources
Trimgalore though it can be a bottom neck, doesn't require the 1 big memory node we have and can be run on the genomics queue.
This commit is contained in:
parent
4570718b12
commit
34ccce9531
1 changed files with 22 additions and 0 deletions
|
@ -20,6 +20,28 @@ process {
|
|||
beforeScript = 'module load singularity/3.2.1'
|
||||
executor = 'slurm'
|
||||
queue = { task.memory >= 32.GB && task.cpu <= 12 ? 'Kim': task.memory <= 24.GB && task.cpu <= 8 ? 'smallmem' : 'genomics' }
|
||||
|
||||
withName:TRIMGALORE {
|
||||
memory = 31.GB
|
||||
}
|
||||
|
||||
withLabel:process_low {
|
||||
cpus = { check_max( 2 * task.attempt, 'cpus' ) }
|
||||
memory = { check_max( 12.GB * task.attempt, 'memory' ) }
|
||||
time = { check_max( 6.h * task.attempt, 'time' ) }
|
||||
}
|
||||
|
||||
withLabel:process_medium {
|
||||
cpus = { check_max( 16 * task.attempt, 'cpus' ) }
|
||||
memory = { check_max( 31.GB * task.attempt, 'memory' ) }
|
||||
time = { check_max( 8.h * task.attempt, 'time' ) }
|
||||
}
|
||||
|
||||
withLabel:process_large {
|
||||
cpus = { check_max( 12 * task.attempt, 'cpus' ) }
|
||||
memory = { check_max( 1.GB * task.attempt, 'memory' ) }
|
||||
time = { check_max( 16.h * task.attempt, 'time' ) }
|
||||
}
|
||||
}
|
||||
|
||||
params {
|
||||
|
|
Loading…
Reference in a new issue