millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Get czbiohub config to work

Browse source
This commit is contained in:
Olga Botvinnik 2019-06-05 14:42:07 -07:00
parent 9c0315addb
commit 3a481402b8
1 changed files with 7 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
conf/czbiohub.config → conf/czbiohub_aws.config
View file

@ -20,8 +20,15 @@ docker {
process {
executor = 'awsbatch'
queue = 'nextflow'
}
workDir = "s3://czb-nextflow/work"
aws.region = 'us-west-2'
executor.awscli = '/home/ec2-user/miniconda/bin/aws'
params.tracedir = './'
params {
saveReference = true
@ -42,7 +49,6 @@ params {
// AWS configurations
awsregion = "us-west-2"
awsqueue = "nextflow"
workDir = "s3://czb-nextflow/rnaseq/"
// GENCODE GTF and fasta files
genomes {