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Get czbiohub config to work
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1 changed files with 7 additions and 1 deletions
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@ -20,8 +20,15 @@ docker {
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process {
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executor = 'awsbatch'
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queue = 'nextflow'
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}
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workDir = "s3://czb-nextflow/work"
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aws.region = 'us-west-2'
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executor.awscli = '/home/ec2-user/miniconda/bin/aws'
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params.tracedir = './'
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params {
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saveReference = true
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@ -42,7 +49,6 @@ params {
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// AWS configurations
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awsregion = "us-west-2"
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awsqueue = "nextflow"
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workDir = "s3://czb-nextflow/rnaseq/"
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// GENCODE GTF and fasta files
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genomes {
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