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Get czbiohub config to work

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This commit is contained in:
Olga Botvinnik 2019-06-05 14:42:07 -07:00
parent 9c0315addb
commit 3a481402b8
1 changed files with 7 additions and 1 deletions
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8
conf/czbiohub.config → conf/czbiohub_aws.config
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@ -20,8 +20,15 @@ docker {
process { process {
executor = 'awsbatch' executor = 'awsbatch'
queue = 'nextflow'
} }
workDir = "s3://czb-nextflow/work"
aws.region = 'us-west-2'
executor.awscli = '/home/ec2-user/miniconda/bin/aws'
params.tracedir = './'
params { params {
saveReference = true saveReference = true
@ -42,7 +49,6 @@ params {
// AWS configurations // AWS configurations
awsregion = "us-west-2" awsregion = "us-west-2"
awsqueue = "nextflow" awsqueue = "nextflow"
workDir = "s3://czb-nextflow/rnaseq/"
// GENCODE GTF and fasta files // GENCODE GTF and fasta files
genomes { genomes {