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Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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Maxime Garcia 2021-04-20 16:03:34 +02:00 committed by GitHub
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@ -8,7 +8,7 @@ We have a Slack channel dedicated to UPPMAX users on the nf-core Slack: [https:/
## Using the UPPMAX config profile
Before running the pipeline you will need to either install Nextflow or load it using the environment module system.
Before running the pipeline you will need to either install Nextflow or load it using the environment module system (this can be done with e.g. `module load bioinfo-tools Nextflow/<VERSION>` where `VERSION` is e.g. `20.10`).
To use, run the pipeline with `-profile uppmax` (one hyphen).
This will download and launch the [`uppmax.config`](../conf/uppmax.config) which has been pre-configured with a setup suitable for the UPPMAX servers.