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ATAC-seq pipeline config

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Java processes with overhead memory requirements
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ameynert 2021-03-30 16:31:00 +01:00 committed by GitHub
parent e5f2a63079
commit 6e201a71f4
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1 changed files with 14 additions and 0 deletions
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conf/pipeline/atacseq/eddie.config Normal file
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process {
withName : "FASTQC" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName : "MERGED_LIB_BAM" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName : "MERGED_LIB_PICARD_METRICS" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName : "MERGED_REP_BAM" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
}