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Merge pull request #257 from drpatelh/V1200
Add ARTIC v1200 primers to genomes config for viralrecon
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commit
836d3c4015
1 changed files with 6 additions and 0 deletions
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@ -43,6 +43,12 @@ params {
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primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4/SARS-CoV-2.scheme.bed'
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primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4/SARS-CoV-2.scheme.bed'
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scheme = 'SARS-CoV-2'
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scheme = 'SARS-CoV-2'
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}
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}
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'1200' {
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fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
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gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
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primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.bed'
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scheme = 'nCoV-2019'
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}
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}
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}
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}
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}
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}
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}
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