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Code Issues Releases Packages Activity

Remove workDir in czbiohub

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drpatelh 2019-07-31 23:30:51 +01:00
parent 7ee70fb742
commit a692ded933
2 changed files with 3 additions and 3 deletions
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2
conf/czbiohub_aws.config
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@ -24,7 +24,7 @@ process {
errorStrategy = 'ignore' errorStrategy = 'ignore'
} }
workDir = "s3://czb-nextflow/intermediates/" //workDir = "s3://czb-nextflow/intermediates/"
aws.region = 'us-west-2' aws.region = 'us-west-2'
executor.awscli = '/home/ec2-user/miniconda/bin/aws' executor.awscli = '/home/ec2-user/miniconda/bin/aws'

4
nfcore_custom.config
View file

@ -18,7 +18,8 @@ profiles {
ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" } ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" } cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" }
crick { includeConfig "${params.custom_config_base}/conf/crick.config" } crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
czbiohub_aws_highpriority { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config"; includeConfig "${params.custom_config_base}/conf/czbiohub_aws_highpriority.config" }
gis { includeConfig "${params.custom_config_base}/conf/gis.config" } gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" } hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
mendel { includeConfig "${params.custom_config_base}/conf/mendel.config" } mendel { includeConfig "${params.custom_config_base}/conf/mendel.config" }
@ -29,7 +30,6 @@ profiles {
shh { includeConfig "${params.custom_config_base}/conf/shh.config" } shh { includeConfig "${params.custom_config_base}/conf/shh.config" }
uct_hex { includeConfig "${params.custom_config_base}/conf/uct_hex.config" } uct_hex { includeConfig "${params.custom_config_base}/conf/uct_hex.config" }
uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" } uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config"; includeConfig "${params.custom_config_base}/conf/uppmax_devel.config" }
uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" } uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
} }