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Merge pull request #1 from ggrimes/patch-1

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changed # to // for comments
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ameynert 2021-03-04 19:48:45 +00:00 committed by GitHub
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conf/eddie.config
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@ -16,16 +16,16 @@ singularity {
process { process {
executor = 'sge' executor = 'sge'
# memory environment & options // memory environment & options
clusterOptions = {"-l h_vmem=${task.memory.bytes/task.cpus}"} clusterOptions = {"-l h_vmem=${task.memory.bytes/task.cpus}"}
penv = 'sharedmem' penv = 'sharedmem'
# common SGE error statuses // common SGE error statuses
errorStrategy = {task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish'} errorStrategy = {task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish'}
maxErrors = '-1' maxErrors = '-1'
maxRetries = 3 maxRetries = 3
# load module script for Anaconda and Singularity // load module script for Anaconda and Singularity
beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' } beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' }
module = 'anaconda/5.3.1' module = 'anaconda/5.3.1'
module = 'singularity/3.5.3' module = 'singularity/3.5.3'