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Update shh.config

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James A. Fellows Yates 2021-02-04 08:13:16 +01:00 committed by GitHub
parent c515a401c7
commit e32f1e46ff
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1 changed files with 4 additions and 3 deletions
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7
conf/pipeline/eager/shh.config
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@ -82,7 +82,7 @@ profiles {
maxRetries = 2
withName: 'malt' {
withName:malt {
maxRetries = 1
memory = { task.attempt > 1 ? 1900.GB : 725.GB }
cpus = { task.attempt > 1 ? 112 : 64 }
@ -90,10 +90,11 @@ profiles {
queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
}
withName: 'hostremoval_input_fastq' {
withName:hostremoval_input_fastq {
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 32.GB * task.attempt, 'memory' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 2.h }
time = 1440.h
queue = 'long'
}
withLabel:'sc_tiny'{