337 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
noirot	07b1f17d6a	correct md to pass linter	2019-11-26 15:02:06 +01:00
noirot	3d8da62db3	add genotoul profile name to the build matrix	2019-11-26 14:57:17 +01:00
Noirot Céline	3ed206b7a7	Update docs/genotoul.md ... ok Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-11-26 14:52:45 +01:00
Noirot Céline	288294994e	Update docs/genotoul.md ... ok Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-11-26 14:52:32 +01:00
Noirot Céline	611c318569	Update conf/genotoul.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-11-26 14:50:05 +01:00
Noirot Céline	dd4ff452da	Update conf/genotoul.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-11-26 14:49:47 +01:00
noirot	e95196451f	correct md to pass linter	2019-11-26 14:47:23 +01:00
noirot	42c949db95	correct md to pass linter	2019-11-26 14:43:42 +01:00
Alexander Peltzer	23f9fd2d73	Merge branch 'master' into master	2019-11-26 14:20:36 +01:00
Alexander Peltzer	ebb89f2714	Don't check that anymore	2019-11-26 14:06:30 +01:00
Alexander Peltzer	cfc30418b2	Merge branch 'master' of https://github.com/apeltzer/configs	2019-11-26 14:05:09 +01:00
Alexander Peltzer	9caf9821c9	Use strip	2019-11-26 14:04:58 +01:00
Alexander Peltzer	d592c79954	Merge branch 'master' into master	2019-11-26 13:59:06 +01:00
Alexander Peltzer	cb876594a3	Proper user tests now :-)	2019-11-26 13:57:32 +01:00
Noirot Céline	42d99e7006	Update genotoul.md	2019-11-26 13:18:34 +01:00
Alexander Peltzer	00db62416f	Merge pull request #89 from MaxUlysse/AWSBATCH ... Fix issues with awsbatch profile	2019-11-26 11:23:15 +01:00
Maxime Garcia	1ce8ce0c55	Apply suggestions from code review	2019-11-26 11:00:24 +01:00
MaxUlysse	75c1fd5cd9	fix tests	2019-11-26 10:43:23 +01:00
Alexander Peltzer	7e3efcac5c	Enjoy	2019-11-26 00:59:09 +01:00
Alexander Peltzer	b60fa8109e	Shift some configs to params scope	2019-11-26 00:57:10 +01:00
Alexander Peltzer	3d7f5436b1	Its in workflows	2019-11-26 00:54:17 +01:00
Alexander Peltzer	5a1dbf2dc7	Rename configs tests	2019-11-26 00:52:39 +01:00
Alexander Peltzer	4062c8b4dc	Fix indentation	2019-11-26 00:51:08 +01:00
Alexander Peltzer	aeb2fb6dc0	Fix all the markdownlinting errors	2019-11-26 00:48:17 +01:00
Alexander Peltzer	2d16917473	Fix linting	2019-11-26 00:34:55 +01:00
Alexander Peltzer	64a3240a51	Fix linting	2019-11-26 00:29:04 +01:00
Alexander Peltzer	b084b9ad3c	Adds in GitHub Actions tests	2019-11-26 00:25:49 +01:00
noirot	9e5b76827f	add genotoul in README.md	2019-11-25 16:37:00 +01:00
Noirot Céline	ed4436c1a6	Merge branch 'master' into master	2019-11-25 16:24:12 +01:00
noirot	42d968fd2a	add genotoul in nfcore_custom	2019-11-25 16:23:25 +01:00
noirot	db51c49b2f	Add genotoul config	2019-11-25 14:54:25 +01:00
Maxime Garcia	a283c5b7c4	Merge pull request #71 from MaxUlysse/master ... Add profiles that should be shared with all pipelines to configs	2019-11-19 19:43:50 +01:00
MaxUlysse	cb1c2eacd0	Z->S	2019-11-19 16:36:51 +01:00
MaxUlysse	08a6b74825	add new profile to be shared: awsbatch	2019-11-19 14:16:06 +01:00
Alexander Peltzer	bc9ecf50ac	Update binac.config ... Upgrade to 3.4.2	2019-11-11 13:56:17 +01:00
Alexander Peltzer	e66ca6f670	Merge pull request #83 from nf-core/cfc_new_singularity_test ... Update Singularity to 3.4.2 on CFC	2019-11-11 13:55:01 +01:00
Alexander Peltzer	fd7bdecfb7	Merge pull request #84 from apeltzer/master ... Fix denbi docs	2019-11-11 12:29:11 +01:00
Alexander Peltzer	3b6c9d0360	Fix denbi docs	2019-11-11 12:28:45 +01:00
Alexander Peltzer	f19ddb847d	Merge pull request #79 from apeltzer/master ... Fix for BinAC profile / resources etc pp	2019-11-11 12:26:45 +01:00
Alexander Peltzer	d2603a134e	Add in denbi cloud configs	2019-11-11 12:26:19 +01:00
Alexander Peltzer	426017d727	Merge remote-tracking branch 'upstream/master'	2019-11-11 12:21:53 +01:00
Phil Ewels	6790dbd4a3	Merge pull request #82 from arontommi/dev ... documentation on how to fix bianca "Requested node configuration is not available" problem	2019-11-08 15:07:07 +01:00
Phil Ewels	5e7d13df89	Update uppmax.md	2019-11-08 10:59:34 +01:00
Alexander Peltzer	16a0ba9fd5	Update cfc.config	2019-11-08 10:06:23 +01:00
arontommi	99f4d9b9bd	documentation on how to fix bianca cluster configuration problem	2019-11-06 13:10:09 +01:00
James A. Fellows Yates	ebbf884ac5	Merge pull request #81 from maxibor/master ... Update shh doc	2019-10-28 20:02:27 +01:00
maxibor	47a7d57db4	update shh doc	2019-10-28 16:09:00 +01:00
Alexander Peltzer	84178c2550	Merge pull request #80 from phue/remove_mendel ... MENDEL is no more	2019-10-28 14:45:18 +01:00
phue	5a9dbe5d7c	MENDEL is no more ... the cluster is no longer operational, was replaced by CBE	2019-10-28 14:11:34 +01:00
Alexander Peltzer	eb6d23254d	Fix binac resources	2019-10-28 13:22:12 +01:00