millironx/nf-configs
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30 commits

Author SHA1 Message Date
mseybold
f196de8246
Update cfc.config 
singularity is now installed natively on the nodes, so no more need for a module here
 2021-06-10 12:34:58 +02:00
FriederikeHanssen
d6813d9c39 Add scratch = true to avoid writing of intermediate file to /tmp 2020-05-04 17:09:43 +02:00
ggabernet
c81f693f73 add cfc_dev config 2020-03-23 17:16:34 +01:00
mseybold
52842de88b
Update cfc.config 
test failed, so added the the default queue
 2020-03-06 10:46:37 +01:00
mseybold
8e42bbd7d0
Update cfc.config 
We just added some new HighMem nodes to the cfc, Partition/queue name is qbic, each node has 128Cores and 2TB of RAM.
The old queue (Name compute) is set to default by slurm.
Each process over 60GB of RAM or over 20cpus should run on those new nodes.
So added the queue State and adjusted the max_memory and max_cpu setting.
 2020-03-06 10:25:08 +01:00
Sabrina Krakau
2eed8f7429 Lowered max. memory for cfc 2019-11-28 12:49:02 +01:00
ggabernet
834f4b4179 updated memory cfc config 2019-11-26 17:30:41 +01:00
Alexander Peltzer
16a0ba9fd5
Update cfc.config 2019-11-08 10:06:23 +01:00
Sven Fillinger
dc3faf8a5f Sends weblog messages over HTTPS 2019-10-10 12:56:39 +02:00
Sven Fillinger
855da0cee3 Refactors weblog url 2019-10-08 14:19:42 +02:00
Alexander Peltzer
ed8c9d9e7a
Update cfc.config 2019-10-08 13:20:58 +02:00
Alexander Peltzer
1e54d9510d
Update cfc.config 2019-10-08 13:15:49 +02:00
Alexander Peltzer
865909ac54
Update cfc.config 2019-10-08 13:14:21 +02:00
Alexander Peltzer
5fae33669d
Update cfc.config 
Try this out 👍
 2019-10-08 13:07:28 +02:00
Alexander Peltzer
4555dd7d36
Update conf/cfc.config 2019-10-08 12:51:01 +02:00
Alexander Peltzer
abb6780081
Add Singularity Cache Directory 2019-10-08 12:48:24 +02:00
Alexander Peltzer
9106559b2f
Update cfc.config 2019-07-15 17:53:11 +02:00
Alexander Peltzer
45d36a1506
Update cfc.config 
Add Weblog for CFC cluster
 2019-07-03 09:21:16 +02:00
Harshil Patel
8bc975c8c3
Merge pull request #33 from ewels/master 
Removed params.config_profile_name, added params.hostnames
 2019-03-13 16:49:43 +00:00
Phil Ewels
1191863e1c Removed params.config_profile_name, added params.hostnames 2019-03-13 17:19:34 +01:00
Alexander Peltzer
3ee7195fa8 Central resource for both binac and cfc now 2019-03-12 14:58:41 +01:00
Alexander Peltzer
6b21538062 Rolling out iGenomes now 2019-03-07 16:12:30 +01:00
Alexander Peltzer
164ae59568
Update cfc.config 
Please use the newest singularity version 3.0.3!
 2019-02-21 10:49:29 +01:00
Alexander Peltzer
d6ea834f40
Update cfc.config 2019-02-21 09:17:28 +01:00
Alexander Peltzer
637ffb782c
Fix CFC config 2019-02-19 17:03:53 +01:00
Phil Ewels
66a08891c7 Documentation tweaks 2019-01-07 14:25:06 +01:00
Alexander Peltzer
7af6b48b4d Adjust general usage to separate params section 2019-01-04 14:55:22 +01:00
Alexander Peltzer
078272745a Update BINAC, CFC, SHH COnfig profiles 2019-01-04 14:42:09 +01:00
Phil Ewels
e38e9327f4 Some tidying 2018-11-26 17:32:06 +01:00
drpatelh
d52db66077 Added existing configs from all pipelines 2018-11-23 15:56:34 +00:00