millironx/nf-configs
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27 commits

Author SHA1 Message Date
Praveen Raj S
1d4f254e43
Update munin.config 2022-03-16 14:37:28 +01:00
Praveen Raj S
9747d5fe15
Added PileupSummariesForMutect2 in CPU limit list 
Add PileupSummariesForMutect2 to the list to run with less threads.
Changed the MaxForks to 12
Tested on an internal sample and it worked!
 2022-03-16 14:36:25 +01:00
Praveen Raj S
a844335942
Update conf/munin.config 
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
 2022-03-15 16:59:06 +01:00
Praveen Raj S
cb96c4bd2d
Update conf/munin.config 
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
 2022-03-15 16:56:11 +01:00
Praveen Raj S
13c66f7e98
Update conf/munin.config 
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
 2022-03-15 16:56:03 +01:00
Praveen Raj S
50c4610345
Adjusted time and maxforks for Mutect2 2022-03-15 16:29:19 +01:00
Maxime U. Garcia
41e00ae8f9
Update conf/munin.config 2022-02-14 13:11:46 +01:00
Praveen Raj S
90936a5518
Added: runOptions to singularity 
To bind external mount directories at runtime.
 2022-02-14 12:45:20 +01:00
MaxUlysse
05548bdb75 fix: forgotten } 2021-05-20 09:37:48 +02:00
MaxUlysse
73fcc4495a feat: update owner of profile 2021-05-19 20:46:52 +02:00
Maxime Garcia
68c709432f
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:17:32 +01:00
Maxime Garcia
93d5156c7d Update conf/munin.config 2019-11-26 11:48:29 +01:00
MaxUlysse
e98f74e47b actually belong to nf-core/configs/munin 2019-11-26 11:48:29 +01:00
MaxUlysse
cd1d0b5f8f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:25:29 +01:00
Szilveszter Juhos
c3c0d088dd
typo 2019-08-16 11:13:32 +02:00
MaxUlysse
4183090379 fix: reduce cpu and mem usage 2019-08-07 12:26:51 +02:00
MaxUlysse
23dd3dd098 Merge branch 'master' of github.com:MaxUlysse/nf-core_configs 2019-08-07 11:56:52 +02:00
MaxUlysse
0bd19517b3 fix: typos 2019-08-07 11:55:56 +02:00
Maxime Garcia
d6a763214c
Update conf/munin.config 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-08-07 11:47:47 +02:00
Maxime Garcia
12fb2a60c5
Update conf/munin.config 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-08-07 11:47:41 +02:00
MaxUlysse
332ba0dadb fix: update and rearrange munin configuration file and docs 2019-08-07 11:10:48 +02:00
Szilveszter Juhos
f40ed194e3 Using correct reference location for munin 2019-06-24 09:54:37 +02:00
Phil Ewels
1191863e1c Removed params.config_profile_name, added params.hostnames 2019-03-13 17:19:34 +01:00
Martin Proks
7acd9cf7df
Updating suggested changes 2019-01-11 15:28:10 +01:00
Martin Proks
89dbb6c061
Setting Singularity as default method 2019-01-11 14:37:12 +01:00
Martin Proks
548c8bca3f
Updated munin doc and configuration 2019-01-10 15:46:16 +01:00
Martin Proks
f259178642
Added munin config boilerplate 2019-01-09 17:27:55 +01:00