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Author	SHA1	Message	Date
Thiseas C. Lamnidis	4592969613	memory for get_software_versions in MB.	2022-05-03 16:30:04 +02:00
Thiseas C. Lamnidis	79ad571319	Update eva.config	2022-05-03 16:25:48 +02:00
Thiseas C. Lamnidis	04226692fe	Update eva.config	2022-05-03 16:21:35 +02:00
Thiseas C. Lamnidis	57095fe79f	Update eva.config ... Set max heap size for java jobs in `get_software_versions`. Limited OpenBLAS threading for python jobs that use numpy/pandas.	2022-05-03 16:12:20 +02:00
James A. Fellows Yates	d1c1b467c1	Merge pull request #366 from jfy133/master ... Add more memory to get_software_versions for eva @ EAGER	2022-05-02 14:54:26 +02:00
James A. Fellows Yates	b5d9b79377	Merge branch 'nf-core:master' into master	2022-05-02 13:59:18 +02:00
James A. Fellows Yates	bf658abc77	Update eva.config	2022-05-02 13:59:13 +02:00
Ramprasad Neethiraj	40c965c76b	fix sentieon errors	2022-04-29 00:20:57 +02:00
James Fellows Yates	4885b672b1	Prettier	2022-04-25 11:46:32 +02:00
James A. Fellows Yates	b2d6fb6f5e	Merge pull request #365 from rajewski/master ... Cedars-Sinai HPC	2022-04-25 10:44:33 +02:00
Alex Rajewski	d261b3df78	add cedars-sinai	2022-04-22 10:29:22 -07:00
Alex Rajewski	aa2c3e256b	add cedars-sinai	2022-04-22 10:27:50 -07:00
Alex Rajewski	c60d73b565	add Cedars-Sinai HPC	2022-04-22 10:26:32 -07:00
Alex Rajewski	7d6482c652	Merge pull request #1 from rajewski/patch-1 ... usage notes	2022-04-22 10:24:33 -07:00
Alex Rajewski	766eb450be	usage notes	2022-04-22 10:23:19 -07:00
Alex Rajewski	69d1a14894	basic Cedars-Sinai HPC config file	2022-04-22 10:17:13 -07:00
James A. Fellows Yates	c1425c6c01	Merge pull request #364 from jfy133/eva-update ... Update eager @ eva.config to allow retry on post-processing FASTQ	2022-04-22 11:47:10 +02:00
Ramprasad Neethiraj	9da85209f2	change bcftools output format	2022-04-22 11:05:56 +02:00
Ramprasad Neethiraj	447b3ee05d	add beforescript for sentieon	2022-04-22 11:03:09 +02:00
James A. Fellows Yates	a086878c0b	Update eva.config	2022-04-22 10:47:04 +02:00
Ramprasad Neethiraj	3e3e2be04b	remove duplicate entries	2022-04-22 00:09:29 +02:00
Ramprasad Neethiraj	d39bec05dc	fix typo	2022-04-19 13:21:51 +02:00
Ramprasad Neethiraj	32207a2402	update path so that the sentieon version is explicit	2022-04-19 11:42:05 +02:00
Ramprasad Neethiraj	6fad232232	sentieon env variable	2022-04-19 11:27:35 +02:00
Ramprasad Neethiraj	afe935c2d0	include stub profile	2022-04-15 15:27:41 +02:00
Maxime U. Garcia	e9d93d62e0	Merge pull request #362 from nf-core/praveenraj2018-patch-1 ... Update: sentieon version	2022-04-07 12:52:33 +02:00
Praveen Raj S	edaad1cd18	Update: sentieon version ... Sentieon version has been updated to 202112.02.	2022-04-07 12:36:01 +02:00
James A. Fellows Yates	d49b21efdc	Merge pull request #361 from jfy133/master ... Re-add accidently removed BWA bionode exclusions EAGER @ EVA	2022-03-31 14:11:54 +02:00
James A. Fellows Yates	44238471cf	Update eva.config	2022-03-31 13:12:50 +02:00
James A. Fellows Yates	f172cce8b2	Merge pull request #360 from jfy133/master ... Re-add bash bin specification for EVA	2022-03-31 12:58:06 +02:00
James Fellows Yates	2277b541a3	Re-add bash bin specification	2022-03-31 11:06:53 +02:00
James A. Fellows Yates	7cad02d327	Merge pull request #359 from jfy133/fix-eva ... Remove -S /bin/bash in clusteroptions for EVA	2022-03-29 13:51:41 +02:00
James A. Fellows Yates	8ad4ddac6a	Merge branch 'master' into fix-eva	2022-03-29 12:50:54 +02:00
James Fellows Yates	3d2a612b39	Remove setting of bash in clusterOotions	2022-03-29 12:48:37 +02:00
James A. Fellows Yates	576351219a	Update eva.config	2022-03-29 12:47:46 +02:00
James A. Fellows Yates	9e502025b9	Merge pull request #358 from aidaanva/master ... Update eva.config bigmem.q	2022-03-28 09:11:18 +02:00
James A. Fellows Yates	b0c9ac9be8	Update eva.md	2022-03-28 09:02:26 +02:00
Phil Ewels	1f872aea87	Merge pull request #357 from mahesh-panchal/uppmax-hostname-fix ... Execute sinfo with bash shell	2022-03-25 15:31:09 +01:00
Mahesh Binzer-Panchal	3a7f7f431e	Execute sinfo with bash shell	2022-03-25 13:58:37 +00:00
Aida Andrades Valtueña	b9da0b4f00	Update eva.config ... Update eva.config to send big memory jobs (>700G) to the bigmem queue	2022-03-25 09:36:29 +01:00
Phil Ewels	7d72e8d94b	Merge pull request #356 from b97pla/uppmax_miarka_config ... removed process-specific requirements for sarek, request miarka high-…	2022-03-24 14:33:06 +01:00
b97pla	9a6cdfc21e	removed process-specific requirements for sarek, request miarka high-mem node	2022-03-24 14:25:43 +01:00
Phil Ewels	80ec4485b6	Merge pull request #355 from b97pla/uppmax_miarka_config ... added requirements for uppmax cluster miarka	2022-03-23 16:56:44 +01:00
b97pla	5466d927f1	added requirements for uppmax cluster miarka	2022-03-23 15:29:40 +01:00
Phil Ewels	2c18f8c5da	Merge pull request #354 from Emiller88/prettier	2022-03-23 12:31:41 +01:00
Edmund Miller	590045be31	ci: Run linting only once	2022-03-21 19:23:29 -05:00
Edmund Miller	ac6c08fbf4	style: yaml => yml	2022-03-21 19:23:29 -05:00
Edmund Miller	c909b36a5e	style: Allow editorconfig to manage tab widths	2022-03-21 19:23:29 -05:00
Edmund Miller	6c37bf3b20	style: Run prettier	2022-03-21 19:23:28 -05:00
Edmund Miller	58da86d729	ci: Use prettier	2022-03-21 19:13:59 -05:00