Maxime Garcia
08e2804b37
Merge branch 'master' into Uppmax
2020-02-20 17:18:46 +01:00
MaxUlysse
aa905cd645
add UPPMAX specific sarek config
2020-02-20 17:14:18 +01:00
Maxime Garcia
fed5524695
Merge pull request #120 from nf-core/d4straub-patch-1
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Update binac.config
2020-02-19 11:33:47 +01:00
Daniel Straub
744db30da4
Update binac.config
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This is now close to optimal I think.
2020-02-19 11:27:02 +01:00
Alexander Peltzer
01d571cc4c
Merge pull request #119 from MaxUlysse/master
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Add social preview image
2020-02-18 00:19:52 +01:00
MaxUlysse
f16c740863
add social preview image
2020-02-12 11:58:26 +01:00
Harshil Patel
abcbb0f5ca
Merge pull request #118 from marchoeppner/ccga-config
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Adding new CCGA Med Cluster to profiles
2020-02-11 12:00:36 +00:00
Harshil Patel
ef8534d481
Update README.md
2020-02-11 11:57:04 +00:00
marchoeppner
0830203b70
Adding new CCGA Med Cluster to profiles
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Updating README and fixing linting errors in CCGA_MED profile
Fixing order in profile queue and removed leading slash from readme for ccga profile docs
Fixing order in profile queue and removed leading slash from readme for ccga profile docs
2020-02-11 11:12:51 +01:00
Daniel Straub
a5e183266e
Merge pull request #117 from nf-core/d4straub-patch-1
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Cleanup config
2020-02-07 15:18:18 +01:00
Daniel Straub
b7be65a31e
Cleanup config
2020-02-07 14:53:43 +01:00
Alexander Peltzer
30735c3de7
Merge pull request #115 from nf-core/d4straub-patch-1
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Update binac.config
2020-01-28 11:45:29 +01:00
Daniel Straub
7346bffdc8
Update binac.config
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Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.
2020-01-28 08:48:34 +01:00
James A. Fellows Yates
28d7e4d4e8
Merge pull request #113 from jfy133/master
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Updates SHH specific nf-core/eager pipeline
2019-12-21 22:28:38 +01:00
James A. Fellows Yates
799f2d5788
Grammar tweak
2019-12-21 20:59:48 +01:00
James A. Fellows Yates
435a5892ea
Updated docs corresponding to 638758423a
2019-12-21 20:59:25 +01:00
James A. Fellows Yates
638758423a
Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max
2019-12-21 20:55:54 +01:00
James A. Fellows Yates
5632a0631a
Merge pull request #8 from nf-core/master
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Syncing
2019-12-21 20:51:38 +01:00
Harshil Patel
01b7357d1d
Merge pull request #112 from drpatelh/master
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Change iGenomes path after fullish sync
2019-12-18 11:12:27 +00:00
drpatelh
bcb8950c2f
Change URL to website
2019-12-18 10:57:12 +00:00
drpatelh
be5ed21269
Update docs
2019-12-18 10:54:31 +00:00
drpatelh
67c231d05c
Change igenomes path
2019-12-18 10:54:23 +00:00
Harshil Patel
aadeea0ab9
Merge pull request #111 from drpatelh/master
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Update awsbatch.config
2019-12-12 14:32:59 +00:00
drpatelh
089b5b8e3b
Update config
2019-12-12 13:44:37 +00:00
drpatelh
0779d25255
Update docs
2019-12-12 13:02:51 +00:00
drpatelh
65c5668568
Update config
2019-12-12 13:02:44 +00:00
Maxime Garcia
d36172d4cf
Merge pull request #110 from MaxUlysse/MUNIN
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fix issue with withLabel selector
2019-12-12 13:03:23 +01:00
MaxUlysse
2bf66514c5
fix issue with withLabel selector
2019-12-12 11:50:10 +01:00
Alexander Peltzer
a4fa95150c
Merge pull request #109 from apeltzer/master
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TZ env for binac
2019-12-12 11:10:22 +01:00
Alexander Peltzer
ecc850fd83
Omit this in TOC
2019-12-11 16:13:15 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC
2019-12-11 16:09:44 +01:00
Alexander Peltzer
49cd35918a
Remove whitespace
2019-12-11 15:59:58 +01:00
Alexander Peltzer
5e6981d0ee
Export TZ in binac config
2019-12-11 15:59:25 +01:00
Alexander Peltzer
271e20e306
Merge pull request #108 from nf-core/fix-env-binac
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Update envWhiteList for Binac Profile for testing purposes
2019-12-11 14:31:22 +01:00
Alexander Peltzer
ac90acf470
Update envWhiteList for Binac Profile for testing purposes
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Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114
2019-12-11 14:26:57 +01:00
Alexander Peltzer
e429758e25
Merge pull request #107 from nf-core/pipelineconfigs_readme_update
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Update README to mention EAGER specific configs
2019-12-10 12:19:26 +01:00
James A. Fellows Yates
71b47e3efa
Updated README to include EAGER specific configs
2019-12-10 11:39:24 +01:00
James A. Fellows Yates
09bc644dcf
Merge pull request #106 from jfy133/master
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Fixes shh eager-specific profile
2019-12-06 20:02:59 +01:00
James A. Fellows Yates
0beb98696f
Merge branch 'master' into master
2019-12-06 19:31:24 +01:00
James A. Fellows Yates
8747be8120
More tweaks, nextflow appears to add a little extra?
2019-12-06 19:27:16 +01:00
James A. Fellows Yates
5c6760b2f0
Tweak back again
2019-12-06 19:25:07 +01:00
James A. Fellows Yates
46f6d20a77
Put parameters back to correct levels
2019-12-06 19:13:29 +01:00
Phil Ewels
4b0fd12752
Merge pull request #105 from nf-core/jfy133-patch-1
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Wrong bracket typo fix -.-
2019-12-06 19:12:50 +01:00
James A. Fellows Yates
18931763fa
Add space?
2019-12-06 19:11:08 +01:00
James A. Fellows Yates
f59443daf0
Update shh.config
2019-12-06 19:09:20 +01:00
James A. Fellows Yates
1ab1370872
Try to make resources satisfiable
2019-12-06 19:06:05 +01:00
James A. Fellows Yates
6e596d1730
Fix stupid wrong bracket typo -.-
2019-12-06 18:37:39 +01:00
James A. Fellows Yates
b28e1a0905
Wrong bracket typo fix -.-
2019-12-06 18:34:18 +01:00
Alexander Peltzer
1f7940c2ee
Merge pull request #104 from jfy133/master
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Attempt to fix process specific configs with pipeline specific configs
2019-12-06 17:16:37 +01:00
jfy133
e8b4675692
Cleanup and tweaking
2019-12-06 13:17:31 +01:00