Alexander Peltzer
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271e20e306
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Merge pull request #108 from nf-core/fix-env-binac
Update envWhiteList for Binac Profile for testing purposes
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2019-12-11 14:31:22 +01:00 |
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Alexander Peltzer
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ac90acf470
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Update envWhiteList for Binac Profile for testing purposes
Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114
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2019-12-11 14:26:57 +01:00 |
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Alexander Peltzer
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e429758e25
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Merge pull request #107 from nf-core/pipelineconfigs_readme_update
Update README to mention EAGER specific configs
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2019-12-10 12:19:26 +01:00 |
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James A. Fellows Yates
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71b47e3efa
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Updated README to include EAGER specific configs
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2019-12-10 11:39:24 +01:00 |
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James A. Fellows Yates
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09bc644dcf
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Merge pull request #106 from jfy133/master
Fixes shh eager-specific profile
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2019-12-06 20:02:59 +01:00 |
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James A. Fellows Yates
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0beb98696f
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Merge branch 'master' into master
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2019-12-06 19:31:24 +01:00 |
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James A. Fellows Yates
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8747be8120
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More tweaks, nextflow appears to add a little extra?
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2019-12-06 19:27:16 +01:00 |
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James A. Fellows Yates
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5c6760b2f0
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Tweak back again
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2019-12-06 19:25:07 +01:00 |
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James A. Fellows Yates
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46f6d20a77
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Put parameters back to correct levels
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2019-12-06 19:13:29 +01:00 |
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Phil Ewels
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4b0fd12752
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Merge pull request #105 from nf-core/jfy133-patch-1
Wrong bracket typo fix -.-
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2019-12-06 19:12:50 +01:00 |
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James A. Fellows Yates
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18931763fa
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Add space?
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2019-12-06 19:11:08 +01:00 |
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James A. Fellows Yates
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f59443daf0
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Update shh.config
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2019-12-06 19:09:20 +01:00 |
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James A. Fellows Yates
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1ab1370872
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Try to make resources satisfiable
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2019-12-06 19:06:05 +01:00 |
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James A. Fellows Yates
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6e596d1730
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Fix stupid wrong bracket typo -.-
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2019-12-06 18:37:39 +01:00 |
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James A. Fellows Yates
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b28e1a0905
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Wrong bracket typo fix -.-
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2019-12-06 18:34:18 +01:00 |
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Alexander Peltzer
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1f7940c2ee
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Merge pull request #104 from jfy133/master
Attempt to fix process specific configs with pipeline specific configs
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2019-12-06 17:16:37 +01:00 |
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jfy133
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e8b4675692
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Cleanup and tweaking
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2019-12-06 13:17:31 +01:00 |
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Maxime Garcia
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9497b78149
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Merge pull request #100 from MaxUlysse/UPPMAX
Improve UPPMAX configs
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2019-12-06 10:52:44 +01:00 |
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Maxime Garcia
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79528de92f
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Update docs/uppmax.md
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
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2019-12-06 10:47:09 +01:00 |
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Maxime Garcia
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14864bb80b
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Update conf/uppmax.config
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2019-12-06 10:31:56 +01:00 |
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Alexander Peltzer
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da547b4ce3
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Merge pull request #102 from phue/cbe_singularity
cbe: load singularity/3.4.1
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2019-12-06 10:21:55 +01:00 |
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phue
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fa777180e6
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cbe: map hostname
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2019-12-05 23:46:25 +01:00 |
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James A. Fellows Yates
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0033b74e4e
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Update shh.config
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2019-12-05 18:08:39 +01:00 |
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James A. Fellows Yates
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dc0f1dfb40
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Update shh.config
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2019-12-05 17:58:49 +01:00 |
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James A. Fellows Yates
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b1a8b45aa0
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Maybe typo?
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2019-12-05 17:52:53 +01:00 |
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James A. Fellows Yates
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ab6c5f05ac
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Merge pull request #7 from nf-core/master
syncing
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2019-12-05 17:37:17 +01:00 |
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James A. Fellows Yates
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0467b44f21
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Merge pull request #103 from jfy133/master
EAGER Pipeline specific config for SHH
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2019-12-05 17:21:18 +01:00 |
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jfy133
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1650080b6e
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Linting
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2019-12-05 17:03:07 +01:00 |
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jfy133
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731372dac2
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Added SHH specific EAGER configuration
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2019-12-05 17:01:10 +01:00 |
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James A. Fellows Yates
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0a3821ce78
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Merge pull request #6 from nf-core/master
Syncing
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2019-12-05 16:14:52 +01:00 |
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phue
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381c60e7b7
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cbe: load singularity/3.4.1
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2019-12-05 16:06:32 +01:00 |
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MaxUlysse
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a63ec24626
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Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX
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2019-12-05 15:18:04 +01:00 |
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MaxUlysse
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99afe86ea9
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update docs
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2019-12-05 15:18:01 +01:00 |
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MaxUlysse
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f41d325873
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automatic configs work on all nodes
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2019-12-05 15:07:59 +01:00 |
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Maxime Garcia
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78826c9d4e
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Merge branch 'master' into UPPMAX
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2019-12-05 12:52:34 +01:00 |
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Alexander Peltzer
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9cdb915efb
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Merge pull request #101 from jfy133/master
Condensing SHH profile(s) with sub-profiles
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2019-12-05 12:51:31 +01:00 |
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MaxUlysse
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cf6e00d9f5
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better match for hostname
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2019-12-05 12:46:32 +01:00 |
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MaxUlysse
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20e451be3b
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actually define hostname
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2019-12-05 12:45:30 +01:00 |
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MaxUlysse
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0211b33a55
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trying automatic configuration based on hostname
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2019-12-05 12:41:18 +01:00 |
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James A. Fellows Yates
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842642a2bb
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Apply suggestions from code review
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:36 +01:00 |
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James A. Fellows Yates
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678a3841b6
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Update conf/shh.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:06 +01:00 |
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jfy133
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3fc1377ff2
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Remove mysterious new line
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2019-12-05 12:16:01 +01:00 |
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jfy133
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41a795f996
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Fixed github actions test
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2019-12-05 12:14:01 +01:00 |
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jfy133
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54dafbcfa3
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Condensing SHH profiles following https://github.com/nf-core/configs/pull/100
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2019-12-05 12:09:11 +01:00 |
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MaxUlysse
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a79dfdf223
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remove uppmax_devel profile
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2019-12-05 12:03:04 +01:00 |
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MaxUlysse
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cdbdbee0eb
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replace -profile uppmax_devel by -profile uppmax,devel
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2019-12-05 11:49:44 +01:00 |
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Alexander Peltzer
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657345fa70
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Merge pull request #99 from nf-core/adjust_cfc_mem
Lowered max. memory for cfc
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2019-11-28 13:35:47 +01:00 |
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Sabrina Krakau
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2eed8f7429
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Lowered max. memory for cfc
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2019-11-28 12:49:02 +01:00 |
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Alexander Peltzer
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fd68a2fbfb
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Merge pull request #98 from nf-core/olgabot-patch-1
Set awsqueue parameter properly
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2019-11-28 12:36:21 +01:00 |
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Olga Botvinnik
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f57e00e87d
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Set awsqueue parameter properly
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2019-11-27 15:57:09 -08:00 |
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