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Author SHA1 Message Date
marchoeppner
0830203b70 Adding new CCGA Med Cluster to profiles 
Updating README and fixing linting errors in CCGA_MED profile

Fixing order in profile queue and removed leading slash from readme for ccga profile docs

Fixing order in profile queue and removed leading slash from readme for ccga profile docs
 2020-02-11 11:12:51 +01:00
Daniel Straub
a5e183266e
Merge pull request #117 from nf-core/d4straub-patch-1 
Cleanup config
 2020-02-07 15:18:18 +01:00
Daniel Straub
b7be65a31e
Cleanup config 2020-02-07 14:53:43 +01:00
Alexander Peltzer
30735c3de7
Merge pull request #115 from nf-core/d4straub-patch-1 
Update binac.config
 2020-01-28 11:45:29 +01:00
Daniel Straub
7346bffdc8
Update binac.config 
Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.
 2020-01-28 08:48:34 +01:00
James A. Fellows Yates
28d7e4d4e8
Merge pull request #113 from jfy133/master 
Updates SHH specific nf-core/eager pipeline
 2019-12-21 22:28:38 +01:00
James A. Fellows Yates
799f2d5788
Grammar tweak 2019-12-21 20:59:48 +01:00
James A. Fellows Yates
435a5892ea
Updated docs corresponding to 638758423a 2019-12-21 20:59:25 +01:00
James A. Fellows Yates
638758423a
Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max 2019-12-21 20:55:54 +01:00
James A. Fellows Yates
5632a0631a
Merge pull request #8 from nf-core/master 
Syncing
 2019-12-21 20:51:38 +01:00
Harshil Patel
01b7357d1d
Merge pull request #112 from drpatelh/master 
Change iGenomes path after fullish sync
 2019-12-18 11:12:27 +00:00
drpatelh
bcb8950c2f Change URL to website 2019-12-18 10:57:12 +00:00
drpatelh
be5ed21269 Update docs 2019-12-18 10:54:31 +00:00
drpatelh
67c231d05c Change igenomes path 2019-12-18 10:54:23 +00:00
Harshil Patel
aadeea0ab9
Merge pull request #111 from drpatelh/master 
Update awsbatch.config
 2019-12-12 14:32:59 +00:00
drpatelh
089b5b8e3b Update config 2019-12-12 13:44:37 +00:00
drpatelh
0779d25255 Update docs 2019-12-12 13:02:51 +00:00
drpatelh
65c5668568 Update config 2019-12-12 13:02:44 +00:00
Maxime Garcia
d36172d4cf
Merge pull request #110 from MaxUlysse/MUNIN 
fix issue with withLabel selector
 2019-12-12 13:03:23 +01:00
MaxUlysse
2bf66514c5 fix issue with withLabel selector 2019-12-12 11:50:10 +01:00
Alexander Peltzer
a4fa95150c
Merge pull request #109 from apeltzer/master 
TZ env for binac
 2019-12-12 11:10:22 +01:00
Alexander Peltzer
ecc850fd83
Omit this in TOC 2019-12-11 16:13:15 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC 2019-12-11 16:09:44 +01:00
Alexander Peltzer
49cd35918a
Remove whitespace 2019-12-11 15:59:58 +01:00
Alexander Peltzer
5e6981d0ee
Export TZ in binac config 2019-12-11 15:59:25 +01:00
Alexander Peltzer
271e20e306
Merge pull request #108 from nf-core/fix-env-binac 
Update envWhiteList for Binac Profile for testing purposes
 2019-12-11 14:31:22 +01:00
Alexander Peltzer
ac90acf470
Update envWhiteList for Binac Profile for testing purposes 
Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114
 2019-12-11 14:26:57 +01:00
Alexander Peltzer
e429758e25
Merge pull request #107 from nf-core/pipelineconfigs_readme_update 
Update README to mention EAGER specific configs
 2019-12-10 12:19:26 +01:00
James A. Fellows Yates
71b47e3efa
Updated README to include EAGER specific configs 2019-12-10 11:39:24 +01:00
James A. Fellows Yates
09bc644dcf
Merge pull request #106 from jfy133/master 
Fixes shh eager-specific profile
 2019-12-06 20:02:59 +01:00
James A. Fellows Yates
0beb98696f
Merge branch 'master' into master 2019-12-06 19:31:24 +01:00
James A. Fellows Yates
8747be8120
More tweaks, nextflow appears to add a little extra? 2019-12-06 19:27:16 +01:00
James A. Fellows Yates
5c6760b2f0
Tweak back again 2019-12-06 19:25:07 +01:00
James A. Fellows Yates
46f6d20a77
Put parameters back to correct levels 2019-12-06 19:13:29 +01:00
Phil Ewels
4b0fd12752
Merge pull request #105 from nf-core/jfy133-patch-1 
Wrong bracket typo fix -.-
 2019-12-06 19:12:50 +01:00
James A. Fellows Yates
18931763fa
Add space? 2019-12-06 19:11:08 +01:00
James A. Fellows Yates
f59443daf0
Update shh.config 2019-12-06 19:09:20 +01:00
James A. Fellows Yates
1ab1370872
Try to make resources satisfiable 2019-12-06 19:06:05 +01:00
James A. Fellows Yates
6e596d1730
Fix stupid wrong bracket typo -.- 2019-12-06 18:37:39 +01:00
James A. Fellows Yates
b28e1a0905
Wrong bracket typo fix -.- 2019-12-06 18:34:18 +01:00
Alexander Peltzer
1f7940c2ee
Merge pull request #104 from jfy133/master 
Attempt to fix process specific configs with pipeline specific configs
 2019-12-06 17:16:37 +01:00
jfy133
e8b4675692 Cleanup and tweaking 2019-12-06 13:17:31 +01:00
Maxime Garcia
9497b78149
Merge pull request #100 from MaxUlysse/UPPMAX 
Improve UPPMAX configs
 2019-12-06 10:52:44 +01:00
Maxime Garcia
79528de92f
Update docs/uppmax.md 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-12-06 10:47:09 +01:00
Maxime Garcia
14864bb80b
Update conf/uppmax.config 2019-12-06 10:31:56 +01:00
Alexander Peltzer
da547b4ce3
Merge pull request #102 from phue/cbe_singularity 
cbe: load singularity/3.4.1
 2019-12-06 10:21:55 +01:00
phue
fa777180e6 cbe: map hostname 2019-12-05 23:46:25 +01:00
James A. Fellows Yates
0033b74e4e
Update shh.config 2019-12-05 18:08:39 +01:00
James A. Fellows Yates
dc0f1dfb40
Update shh.config 2019-12-05 17:58:49 +01:00
James A. Fellows Yates
b1a8b45aa0
Maybe typo? 2019-12-05 17:52:53 +01:00