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Author SHA1 Message Date
jfy133
731372dac2 Added SHH specific EAGER configuration 2019-12-05 17:01:10 +01:00
James A. Fellows Yates
0a3821ce78
Merge pull request #6 from nf-core/master 
Syncing
 2019-12-05 16:14:52 +01:00
phue
381c60e7b7 cbe: load singularity/3.4.1 2019-12-05 16:06:32 +01:00
MaxUlysse
a63ec24626 Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX 2019-12-05 15:18:04 +01:00
MaxUlysse
99afe86ea9 update docs 2019-12-05 15:18:01 +01:00
MaxUlysse
f41d325873 automatic configs work on all nodes 2019-12-05 15:07:59 +01:00
Maxime Garcia
78826c9d4e
Merge branch 'master' into UPPMAX 2019-12-05 12:52:34 +01:00
Alexander Peltzer
9cdb915efb
Merge pull request #101 from jfy133/master 
Condensing SHH profile(s) with sub-profiles
 2019-12-05 12:51:31 +01:00
MaxUlysse
cf6e00d9f5 better match for hostname 2019-12-05 12:46:32 +01:00
MaxUlysse
20e451be3b actually define hostname 2019-12-05 12:45:30 +01:00
MaxUlysse
0211b33a55 trying automatic configuration based on hostname 2019-12-05 12:41:18 +01:00
James A. Fellows Yates
842642a2bb
Apply suggestions from code review 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-12-05 12:23:36 +01:00
James A. Fellows Yates
678a3841b6
Update conf/shh.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-12-05 12:23:06 +01:00
jfy133
3fc1377ff2 Remove mysterious new line 2019-12-05 12:16:01 +01:00
jfy133
41a795f996 Fixed github actions test 2019-12-05 12:14:01 +01:00
jfy133
54dafbcfa3 Condensing SHH profiles following https://github.com/nf-core/configs/pull/100 2019-12-05 12:09:11 +01:00
MaxUlysse
a79dfdf223 remove uppmax_devel profile 2019-12-05 12:03:04 +01:00
MaxUlysse
cdbdbee0eb replace -profile uppmax_devel by -profile uppmax,devel 2019-12-05 11:49:44 +01:00
Alexander Peltzer
657345fa70
Merge pull request #99 from nf-core/adjust_cfc_mem 
Lowered max. memory for cfc
 2019-11-28 13:35:47 +01:00
Sabrina Krakau
2eed8f7429 Lowered max. memory for cfc 2019-11-28 12:49:02 +01:00
Alexander Peltzer
fd68a2fbfb
Merge pull request #98 from nf-core/olgabot-patch-1 
Set awsqueue parameter properly
 2019-11-28 12:36:21 +01:00
Olga Botvinnik
f57e00e87d
Set awsqueue parameter properly 2019-11-27 15:57:09 -08:00
Sabrina Krakau
a7ac981cca
Merge pull request #97 from apeltzer/master 
Mini adjustment for `highmem` queue on denbi
 2019-11-27 14:58:14 +01:00
Alexander Peltzer
4f77eae5cf
Mini adjustment for highmem queue on denbi 2019-11-27 14:23:01 +01:00
Maxime Garcia
64ff62de2c
Merge pull request #85 from MaxUlysse/sarek 
Adding a pipeline specific config for a specific system
 2019-11-27 13:38:45 +01:00
Maxime Garcia
2669401a72
Merge branch 'master' into sarek 2019-11-27 13:27:43 +01:00
MaxUlysse
752fca0530 fix level of hostname 2019-11-27 13:25:52 +01:00
MaxUlysse
7f61d2f81b fix TOC 2019-11-27 13:18:39 +01:00
MaxUlysse
8a73e7f2f8 better explanation 2019-11-27 13:16:08 +01:00
Alexander Peltzer
5e0e3e0567
Merge pull request #96 from jfy133/master 
Splitting SHH config to one per cluster
 2019-11-27 12:06:54 +01:00
Alexander Peltzer
54719c4761
Merge pull request #95 from ggabernet/master 
Update max memory for cfc profile
 2019-11-26 21:21:07 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
e1c8c86d70 Updated core config 2019-11-26 20:26:59 +01:00
jfy133
c89ca84244 Updated github actions test - typo fix 2019-11-26 20:24:23 +01:00
jfy133
e6bf470962 Updated github actions test 2019-11-26 20:23:04 +01:00
jfy133
6f40c13473 Split shh config for each cluster 2019-11-26 20:20:17 +01:00
Patrick Hüther
8a9c321e44
Merge pull request #90 from phue/cbe_iGenomes 
cbe: roll out iGenomes
 2019-11-26 18:15:30 +01:00
phue
672f025639 cbe: add documentation about iGenomes 2019-11-26 18:09:20 +01:00
phue
88b5be3060 Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes 2019-11-26 18:08:43 +01:00
ggabernet
834f4b4179 updated memory cfc config 2019-11-26 17:30:41 +01:00
Gisela Gabernet
55d8e8aca8
Merge pull request #1 from nf-core/master 
update to nf-core
 2019-11-26 17:12:53 +01:00
Alexander Peltzer
ee99d7f2d4
Merge pull request #94 from apeltzer/master 
Mini Cosmetic Fixes for README
 2019-11-26 16:24:30 +01:00
Alexander Peltzer
b756ce54a4
Add genotoul fix 2019-11-26 16:09:08 +01:00
Alexander Peltzer
81739a3907
Merge pull request #93 from jfy133/master 
Updated max resources for SHH SDAG
 2019-11-26 15:56:39 +01:00
Alexander Peltzer
da922b8005
Fix README 2019-11-26 15:45:33 +01:00
Alexander Peltzer
5806cd14e8
Merge branch 'master' of https://github.com/nf-core/configs 2019-11-26 15:36:07 +01:00
James A. Fellows Yates
89506a653c
Remove empty lines in block quotes for linting 2019-11-26 15:34:25 +01:00
Alexander Peltzer
caa979f102
Merge pull request #86 from genotoul-bioinfo/master 
Add genotoul config
 2019-11-26 15:31:02 +01:00
James A. Fellows Yates
12ec22838c
Specified max sources currently at SDAG limits (exceeds cdag) 2019-11-26 15:29:03 +01:00
James A. Fellows Yates
c3d27099ca
Updated authors 2019-11-26 15:26:05 +01:00