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Author	SHA1	Message	Date
Alexander Peltzer	a6d08ed646	Adjust custom pipeline config for ampliseq on BINAC	2019-12-11 16:09:44 +01:00
Alexander Peltzer	49cd35918a	Remove whitespace	2019-12-11 15:59:58 +01:00
Alexander Peltzer	5e6981d0ee	Export TZ in binac config	2019-12-11 15:59:25 +01:00
Alexander Peltzer	271e20e306	Merge pull request #108 from nf-core/fix-env-binac ... Update envWhiteList for Binac Profile for testing purposes	2019-12-11 14:31:22 +01:00
Alexander Peltzer	ac90acf470	Update envWhiteList for Binac Profile for testing purposes ... Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114	2019-12-11 14:26:57 +01:00
Alexander Peltzer	e429758e25	Merge pull request #107 from nf-core/pipelineconfigs_readme_update ... Update README to mention EAGER specific configs	2019-12-10 12:19:26 +01:00
James A. Fellows Yates	71b47e3efa	Updated README to include EAGER specific configs	2019-12-10 11:39:24 +01:00
James A. Fellows Yates	09bc644dcf	Merge pull request #106 from jfy133/master ... Fixes shh eager-specific profile	2019-12-06 20:02:59 +01:00
James A. Fellows Yates	0beb98696f	Merge branch 'master' into master	2019-12-06 19:31:24 +01:00
James A. Fellows Yates	8747be8120	More tweaks, nextflow appears to add a little extra?	2019-12-06 19:27:16 +01:00
James A. Fellows Yates	5c6760b2f0	Tweak back again	2019-12-06 19:25:07 +01:00
James A. Fellows Yates	46f6d20a77	Put parameters back to correct levels	2019-12-06 19:13:29 +01:00
Phil Ewels	4b0fd12752	Merge pull request #105 from nf-core/jfy133-patch-1 ... Wrong bracket typo fix -.-	2019-12-06 19:12:50 +01:00
James A. Fellows Yates	18931763fa	Add space?	2019-12-06 19:11:08 +01:00
James A. Fellows Yates	f59443daf0	Update shh.config	2019-12-06 19:09:20 +01:00
James A. Fellows Yates	1ab1370872	Try to make resources satisfiable	2019-12-06 19:06:05 +01:00
James A. Fellows Yates	6e596d1730	Fix stupid wrong bracket typo -.-	2019-12-06 18:37:39 +01:00
James A. Fellows Yates	b28e1a0905	Wrong bracket typo fix -.-	2019-12-06 18:34:18 +01:00
Alexander Peltzer	1f7940c2ee	Merge pull request #104 from jfy133/master ... Attempt to fix process specific configs with pipeline specific configs	2019-12-06 17:16:37 +01:00
jfy133	e8b4675692	Cleanup and tweaking	2019-12-06 13:17:31 +01:00
Maxime Garcia	9497b78149	Merge pull request #100 from MaxUlysse/UPPMAX ... Improve UPPMAX configs	2019-12-06 10:52:44 +01:00
Maxime Garcia	79528de92f	Update docs/uppmax.md ... Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>	2019-12-06 10:47:09 +01:00
Maxime Garcia	14864bb80b	Update conf/uppmax.config	2019-12-06 10:31:56 +01:00
Alexander Peltzer	da547b4ce3	Merge pull request #102 from phue/cbe_singularity ... cbe: load singularity/3.4.1	2019-12-06 10:21:55 +01:00
phue	fa777180e6	cbe: map hostname	2019-12-05 23:46:25 +01:00
James A. Fellows Yates	0033b74e4e	Update shh.config	2019-12-05 18:08:39 +01:00
James A. Fellows Yates	dc0f1dfb40	Update shh.config	2019-12-05 17:58:49 +01:00
James A. Fellows Yates	b1a8b45aa0	Maybe typo?	2019-12-05 17:52:53 +01:00
James A. Fellows Yates	ab6c5f05ac	Merge pull request #7 from nf-core/master ... syncing	2019-12-05 17:37:17 +01:00
James A. Fellows Yates	0467b44f21	Merge pull request #103 from jfy133/master ... EAGER Pipeline specific config for SHH	2019-12-05 17:21:18 +01:00
jfy133	1650080b6e	Linting	2019-12-05 17:03:07 +01:00
jfy133	731372dac2	Added SHH specific EAGER configuration	2019-12-05 17:01:10 +01:00
James A. Fellows Yates	0a3821ce78	Merge pull request #6 from nf-core/master ... Syncing	2019-12-05 16:14:52 +01:00
phue	381c60e7b7	cbe: load singularity/3.4.1	2019-12-05 16:06:32 +01:00
MaxUlysse	a63ec24626	Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX	2019-12-05 15:18:04 +01:00
MaxUlysse	99afe86ea9	update docs	2019-12-05 15:18:01 +01:00
MaxUlysse	f41d325873	automatic configs work on all nodes	2019-12-05 15:07:59 +01:00
Maxime Garcia	78826c9d4e	Merge branch 'master' into UPPMAX	2019-12-05 12:52:34 +01:00
Alexander Peltzer	9cdb915efb	Merge pull request #101 from jfy133/master ... Condensing SHH profile(s) with sub-profiles	2019-12-05 12:51:31 +01:00
MaxUlysse	cf6e00d9f5	better match for hostname	2019-12-05 12:46:32 +01:00
MaxUlysse	20e451be3b	actually define hostname	2019-12-05 12:45:30 +01:00
MaxUlysse	0211b33a55	trying automatic configuration based on hostname	2019-12-05 12:41:18 +01:00
James A. Fellows Yates	842642a2bb	Apply suggestions from code review ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-12-05 12:23:36 +01:00
James A. Fellows Yates	678a3841b6	Update conf/shh.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-12-05 12:23:06 +01:00
jfy133	3fc1377ff2	Remove mysterious new line	2019-12-05 12:16:01 +01:00
jfy133	41a795f996	Fixed github actions test	2019-12-05 12:14:01 +01:00
jfy133	54dafbcfa3	Condensing SHH profiles following https://github.com/nf-core/configs/pull/100	2019-12-05 12:09:11 +01:00
MaxUlysse	a79dfdf223	remove uppmax_devel profile	2019-12-05 12:03:04 +01:00
MaxUlysse	cdbdbee0eb	replace -profile uppmax_devel by -profile uppmax,devel	2019-12-05 11:49:44 +01:00
Alexander Peltzer	657345fa70	Merge pull request #99 from nf-core/adjust_cfc_mem ... Lowered max. memory for cfc	2019-11-28 13:35:47 +01:00