James Fellows Yates
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7112e74b73
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Tweak settings based on latest batch specs
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2022-03-03 13:43:40 +01:00 |
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James Fellows Yates
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008ade7ab3
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Merge branch 'rnaseq_mpcdf' of github.com:jfy133/nf-core-configs into rnaseq_mpcdf
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2022-03-03 12:26:18 +01:00 |
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James Fellows Yates
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e649bfbb2e
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Linting
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2022-03-03 12:26:14 +01:00 |
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James A. Fellows Yates
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17312604cf
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Update mpcdf.config
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2022-03-03 12:25:06 +01:00 |
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James Fellows Yates
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94f8cbcb84
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Add rnaseq pipeline specific config for MPCDF
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2022-03-03 12:20:02 +01:00 |
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James A. Fellows Yates
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341ea3664e
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Merge pull request #336 from jfy133/master
Fix markdown linting from recently merged configs
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2022-03-02 08:57:20 +01:00 |
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James A. Fellows Yates
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121452afad
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Linting
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2022-03-02 08:51:20 +01:00 |
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James A. Fellows Yates
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15a0571eae
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Fix markdown
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2022-03-02 08:50:42 +01:00 |
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James A. Fellows Yates
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a412510ce8
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Merge pull request #335 from jfy133/master
Remove reference to now-decomissioned dracro @ MPCDF & clean up eager @EVA
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2022-03-02 08:47:47 +01:00 |
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James A. Fellows Yates
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adcfe22f98
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Remove draco entry to MPCDF profiles due to decomissioning
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2022-03-02 08:38:55 +01:00 |
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James A. Fellows Yates
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8174fe6d52
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Merge pull request #2 from nf-core/jfy133-patch
sync
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2022-03-02 08:34:31 +01:00 |
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James A. Fellows Yates
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5547e45ab5
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Merge branch 'master' into jfy133-patch
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2022-03-02 08:28:22 +01:00 |
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James A. Fellows Yates
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ea052a7b67
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Merge pull request #334 from jfy133/eva-update
eva: generalise custom SGE mem flag
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2022-03-01 09:23:04 +01:00 |
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James A. Fellows Yates
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a6c12d8edc
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Merge pull request #322 from U-BDS/master
Add UAB Cheaha profile
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2022-03-01 08:29:54 +01:00 |
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Austyn Trull
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00deea7442
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Adding cheaha to Github Actions testing yaml.
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2022-02-28 10:00:13 -06:00 |
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James A. Fellows Yates
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06aaebbad1
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Merge pull request #303 from PCQuilis/patch-2
added marvin.md link
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2022-02-28 15:03:20 +01:00 |
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James A. Fellows Yates
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4fbebac9b3
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Merge pull request #304 from PCQuilis/patch-1
Create marvin.md added marvin config
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2022-02-28 15:03:07 +01:00 |
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James A. Fellows Yates
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d6f5209afc
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Update marvin.md
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2022-02-28 15:01:12 +01:00 |
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James A. Fellows Yates
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faf83eaeaa
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Merge pull request #305 from PCQuilis/master
conf file in lowercase
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2022-02-28 14:59:22 +01:00 |
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James A. Fellows Yates
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04d8a02ec9
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Update nfcore_custom.config
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2022-02-28 14:56:37 +01:00 |
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James A. Fellows Yates
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5c686f996f
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Update main.yml
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2022-02-28 14:52:32 +01:00 |
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PCQ
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1ff92db608
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Merge branch 'nf-core:master' into master
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2022-02-28 14:50:41 +01:00 |
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James A. Fellows Yates
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89f6484325
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Merge pull request #319 from maltesemike/patch-2
Update mpcdf.config
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2022-02-28 14:06:06 +01:00 |
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James A. Fellows Yates
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46f046d477
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Update eva.config
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2022-02-28 14:00:37 +01:00 |
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James A. Fellows Yates
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d7d9951dbf
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Insert h_vmem for all nf-core pipelines
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2022-02-28 14:00:16 +01:00 |
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James A. Fellows Yates
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6210ee874c
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Update eva.config
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2022-02-28 13:57:37 +01:00 |
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Mei Wu
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ff5750936d
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Merge pull request #332 from projectoriented/hasta/markdupe_remove_cpus
picard md is single threaded
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2022-02-23 16:40:57 +01:00 |
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Mei Wu
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dcba537d15
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picard md is single threaded
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2022-02-21 16:19:17 +01:00 |
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Maxime U. Garcia
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91b5875b44
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Merge pull request #331 from nf-core/praveenraj2018-patch-1
Added: runOptions to singularity
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2022-02-14 13:12:11 +01:00 |
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Maxime U. Garcia
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41e00ae8f9
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Update conf/munin.config
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2022-02-14 13:11:46 +01:00 |
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Praveen Raj S
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90936a5518
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Added: runOptions to singularity
To bind external mount directories at runtime.
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2022-02-14 12:45:20 +01:00 |
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Combiz Khozoie
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2d434c6ee5
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Merge pull request #321 from nf-core/combiz-patch-1
Imperial config updates
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2022-02-11 14:49:30 +00:00 |
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Maxime U. Garcia
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4a936a685e
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Merge pull request #317 from nf-core/praveenraj2018-patch-1
Added genome parameter
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2022-02-11 15:33:18 +01:00 |
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Combiz Khozoie
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a77f718ae2
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Merge pull request #330 from nf-core/master
Pulling master to branch
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2022-02-11 14:18:01 +00:00 |
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Matthias Hörtenhuber
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0d18767d0c
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Merge pull request #329 from mashehu/master
update node version for markdownlint
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2022-02-11 14:32:38 +01:00 |
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Matthias Hörtenhuber
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b98ab26662
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fix markdownlint errors
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2022-02-11 14:09:16 +01:00 |
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Matthias Hörtenhuber
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fcc856c8da
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update node version for markdownlint
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2022-02-11 11:03:18 +00:00 |
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Combiz Khozoie
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3ce32f50c4
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Update imperial.config
Moved params configs from internal profile to universal
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2022-02-11 11:02:40 +00:00 |
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Combiz Khozoie
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683564de1b
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Update main.yml
Removed deprecated imperial medbio from GHA
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2022-02-11 09:35:18 +00:00 |
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Combiz Khozoie
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8937699abe
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Update README.md
Added imperial docs link
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2022-02-11 09:33:54 +00:00 |
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Combiz Khozoie
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f33bc965d6
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Update nfcore_custom.config
Removed deprecated medbio config
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2022-02-11 09:32:50 +00:00 |
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Combiz Khozoie
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b99b74b2d3
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Update imperial.config
Fixed indent
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2022-02-11 00:26:45 +00:00 |
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Combiz Khozoie
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c5e4ac2025
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Update scflow.config
Removed line corresponding to profile deprecated by change to internal profiles
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2022-02-11 00:25:44 +00:00 |
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Combiz Khozoie
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34d9e7a967
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Update imperial.md
Updated docs to reflect use of internal profiles
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2022-02-11 00:08:08 +00:00 |
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Combiz Khozoie
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5aa1abda26
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Delete imperial_mb.md
Deprecated in favour of internal profiles within the single imperial.config
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2022-02-11 00:07:05 +00:00 |
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Combiz Khozoie
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14c7662762
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Update imperial.md
Updated docs to reflect restructuring for internal profiles
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2022-02-10 23:49:43 +00:00 |
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Combiz Khozoie
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38a05a6531
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Update imperial.config
Reworked to use internal profiles for the Imperial HPC and the MedBio cluster.
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2022-02-10 23:46:14 +00:00 |
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Combiz Khozoie
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e1d0bf0cd2
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Delete imperial_mb.config
Separate config for the medbio queue now deprecated in favour of an internal profile within the main imperial.config
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2022-02-10 23:44:49 +00:00 |
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Combiz Khozoie
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fe5474a029
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Update imperial.config
Multiple process level updates reflecting the latest job sizing guidelines for the Imperial HPC
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2022-02-10 23:02:47 +00:00 |
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Harshil Patel
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8fa6ab9b35
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Merge pull request #323 from stevin-wilson/patch-1
Added ARTIC v4.1 primer set information
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2022-02-10 19:17:47 +00:00 |
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