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345 commits

Author SHA1 Message Date
Alexander Peltzer
5c39c1ed1a
Merge branch 'master' into master 2019-11-26 15:07:31 +01:00
noirot
07b1f17d6a correct md to pass linter 2019-11-26 15:02:06 +01:00
noirot
3d8da62db3 add genotoul profile name to the build matrix 2019-11-26 14:57:17 +01:00
Noirot Céline
3ed206b7a7
Update docs/genotoul.md
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-11-26 14:52:45 +01:00
Noirot Céline
288294994e
Update docs/genotoul.md
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-11-26 14:52:32 +01:00
Noirot Céline
611c318569
Update conf/genotoul.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-11-26 14:50:05 +01:00
Noirot Céline
dd4ff452da
Update conf/genotoul.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-11-26 14:49:47 +01:00
noirot
e95196451f correct md to pass linter 2019-11-26 14:47:23 +01:00
noirot
42c949db95 correct md to pass linter 2019-11-26 14:43:42 +01:00
Alexander Peltzer
8ca2e808b4
Merge pull request #91 from apeltzer/master
Fix Github Actions tests
2019-11-26 14:34:53 +01:00
Alexander Peltzer
37c6714cc7
Nice prince 2019-11-26 14:29:52 +01:00
Alexander Peltzer
2ebd2180ed
Add in SCRATCH env 2019-11-26 14:27:22 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Alexander Peltzer
47ac2085f7
Better names 2019-11-26 14:12:41 +01:00
Alexander Peltzer
0afe00ded5
Generalize name 2019-11-26 14:12:19 +01:00
Alexander Peltzer
c3c7c74d79
Better code 2019-11-26 14:11:16 +01:00
Alexander Peltzer
dea11df453
Both on PR and on push 2019-11-26 14:07:25 +01:00
Alexander Peltzer
ebb89f2714
Don't check that anymore 2019-11-26 14:06:30 +01:00
Alexander Peltzer
cfc30418b2
Merge branch 'master' of https://github.com/apeltzer/configs 2019-11-26 14:05:09 +01:00
Alexander Peltzer
9caf9821c9
Use strip 2019-11-26 14:04:58 +01:00
Alexander Peltzer
d592c79954
Merge branch 'master' into master 2019-11-26 13:59:06 +01:00
Alexander Peltzer
cb876594a3
Proper user tests now :-) 2019-11-26 13:57:32 +01:00
Noirot Céline
42d99e7006
Update genotoul.md 2019-11-26 13:18:34 +01:00
Alexander Peltzer
00db62416f
Merge pull request #89 from MaxUlysse/AWSBATCH
Fix issues with awsbatch profile
2019-11-26 11:23:15 +01:00
Maxime Garcia
1ce8ce0c55
Apply suggestions from code review 2019-11-26 11:00:24 +01:00
MaxUlysse
75c1fd5cd9 fix tests 2019-11-26 10:43:23 +01:00
Alexander Peltzer
7e3efcac5c
Enjoy 2019-11-26 00:59:09 +01:00
Alexander Peltzer
b60fa8109e
Shift some configs to params scope 2019-11-26 00:57:10 +01:00
Alexander Peltzer
3d7f5436b1
Its in workflows 2019-11-26 00:54:17 +01:00
Alexander Peltzer
5a1dbf2dc7
Rename configs tests 2019-11-26 00:52:39 +01:00
Alexander Peltzer
4062c8b4dc
Fix indentation 2019-11-26 00:51:08 +01:00
Alexander Peltzer
aeb2fb6dc0
Fix all the markdownlinting errors 2019-11-26 00:48:17 +01:00
Alexander Peltzer
2d16917473
Fix linting 2019-11-26 00:34:55 +01:00
Alexander Peltzer
64a3240a51
Fix linting 2019-11-26 00:29:04 +01:00
Alexander Peltzer
b084b9ad3c
Adds in GitHub Actions tests 2019-11-26 00:25:49 +01:00
noirot
9e5b76827f add genotoul in README.md 2019-11-25 16:37:00 +01:00
Noirot Céline
ed4436c1a6
Merge branch 'master' into master 2019-11-25 16:24:12 +01:00
noirot
42d968fd2a add genotoul in nfcore_custom 2019-11-25 16:23:25 +01:00
noirot
db51c49b2f Add genotoul config 2019-11-25 14:54:25 +01:00
Maxime Garcia
a283c5b7c4
Merge pull request #71 from MaxUlysse/master
Add profiles that should be shared with all pipelines to configs
2019-11-19 19:43:50 +01:00
MaxUlysse
cb1c2eacd0 Z->S 2019-11-19 16:36:51 +01:00
MaxUlysse
08a6b74825 add new profile to be shared: awsbatch 2019-11-19 14:16:06 +01:00
Alexander Peltzer
bc9ecf50ac
Update binac.config
Upgrade to 3.4.2
2019-11-11 13:56:17 +01:00
Alexander Peltzer
e66ca6f670
Merge pull request #83 from nf-core/cfc_new_singularity_test
Update Singularity to 3.4.2 on CFC
2019-11-11 13:55:01 +01:00
Alexander Peltzer
fd7bdecfb7
Merge pull request #84 from apeltzer/master
Fix denbi docs
2019-11-11 12:29:11 +01:00
Alexander Peltzer
3b6c9d0360
Fix denbi docs 2019-11-11 12:28:45 +01:00
Alexander Peltzer
f19ddb847d
Merge pull request #79 from apeltzer/master
Fix for BinAC profile / resources etc pp
2019-11-11 12:26:45 +01:00
Alexander Peltzer
d2603a134e
Add in denbi cloud configs 2019-11-11 12:26:19 +01:00
Alexander Peltzer
426017d727
Merge remote-tracking branch 'upstream/master' 2019-11-11 12:21:53 +01:00
Phil Ewels
6790dbd4a3
Merge pull request #82 from arontommi/dev
documentation on how to fix bianca "Requested node configuration is not available" problem
2019-11-08 15:07:07 +01:00