56 commits

Author	SHA1	Message	Date
Edmund Miller	0cabf67b61	feat(demultiplex): Add optimized transfers for bases2fastq	2022-10-05 17:21:23 -05:00
lquayle88	a9b62c53e0	Added global institutional and pipeline configs for sbc_sharc	2022-09-13 17:02:44 +01:00
SPearce	5981b643c5	Updated the sarek pipeline config	2022-09-01 11:47:12 +01:00
Annick Renevey	242101db16	fix extra space	2022-08-31 14:26:32 +02:00
Annick Renevey	0851903f66	include new config in pipeline configs file	2022-08-31 14:19:07 +02:00
Bruno Grande	6f0d9e6c43	Complete check_max() move to global config	2022-06-23 10:10:28 -07:00
Bruno Grande	1c7230cb08	Add Sage-specific Sarek config	2022-06-23 09:15:42 -07:00
James A. Fellows Yates	7353fb257d	Merge pull request #380 from jfy133/taxprofiler ... Add MAG @ EVA profile	2022-06-03 12:54:47 +02:00
James A. Fellows Yates	24e165c52d	Update pipeline/mag.config	2022-06-03 12:51:47 +02:00
James Fellows Yates	5a67eba04c	Add MAG @ EVA profile	2022-06-03 12:41:08 +02:00
sofstam	c59149d64c	Update docs for hasta config	2022-05-12 10:47:03 +02:00
James Fellows Yates	e1f780d976	Add taxprofiler for eVA	2022-05-12 07:54:17 +01:00
sofstam	5bc6ed90bd	Add hasta config for taxprofiler	2022-05-11 11:13:31 +02:00
James Fellows Yates	94f8cbcb84	Add rnaseq pipeline specific config for MPCDF	2022-03-03 12:20:02 +01:00
Combiz Khozoie	c5e4ac2025	Update scflow.config ... Removed line corresponding to profile deprecated by change to internal profiles	2022-02-11 00:25:44 +00:00
Praveen	b4d5330c0e	Added rnavar pipeline config for Munin	2021-12-14 03:52:37 +01:00
James A. Fellows Yates	73b6b74c69	Merge pull request #279 from pierrespc/master ... Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris	2021-10-08 19:15:47 +02:00
pierrespc	e5d4a357c5	clean doc	2021-10-04 15:08:01 +02:00
pierrespc	f6266879d6	edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet	2021-09-29 13:47:35 +02:00
pierrespc	b71df6fe57	renamed eager pipeline config file	2021-09-29 13:22:07 +02:00
pierrespc	9ea3e2096a	long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes	2021-09-29 13:11:14 +02:00
Mei Wu	79a79f7d8d	added pipeline-specific config	2021-09-28 10:38:25 +02:00
James Fellows Yates	59af7f0eee	Delete SHH profiles due to decommissioning	2021-08-20 10:15:39 +02:00
ameynert	17fad9dd15	Update pipeline/viralrecon.config ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-21 12:27:09 +01:00
ameynert	d9abb7d59f	Added eddie config to viralrecon	2021-07-21 12:23:47 +01:00
Edmund Miller	f9e4ec4a8d	fix(sysbio): Add sysbio to rnaseq	2021-06-17 09:18:45 -05:00
Gisela Gabernet	4e9e5d2c67	Merge branch 'master' into cfc_sarek	2021-04-23 16:47:04 +02:00
James A. Fellows Yates	832edaa450	Merge branch 'master' into eva	2021-04-06 17:51:46 +02:00
ameyner2	da8cf2f207	Added pipeline-specific config files for rnaseq and sarek	2021-03-24 10:46:26 +00:00
FriederikeHanssen	162c212dd4	Remove extra line	2021-03-10 11:17:23 +01:00
FriederikeHanssen	eb9012919c	Set values for processes with max_mem/max_cpus	2021-03-10 11:16:18 +01:00
James A. Fellows Yates	4339e5872c	Update eager.config	2021-02-14 18:05:06 +01:00
Combiz Khozoie	a61992d144	Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO	2020-12-18 10:21:26 +00:00
James A. Fellows Yates	4f991d2c0c	Update eager.config	2020-09-04 19:59:27 +02:00
Alexander Peltzer	f877644059	Merge branch 'master' into master	2020-05-29 11:43:47 +02:00
MaxUlysse	e6f4d58fa6	update rnafusion munin specific config	2020-04-28 17:06:04 +02:00
Harshil Patel	53125368be	Merge branch 'master' into viralreconupdate	2020-04-09 18:21:05 +01:00
Harshil Patel	6834f020cb	Update viralrecon.config	2020-04-09 17:49:15 +01:00
MaxUlysse	5678494e45	fix typo	2020-04-09 17:13:19 +02:00
MaxUlysse	50a44d037b	better docs and organisation of giles	2020-04-09 17:02:36 +02:00
Harshil Patel	4fd9b73cec	Update pipeline/viralrecon.config	2020-04-09 13:31:39 +01:00
Harshil Patel	290d0a2180	Update pipeline/viralrecon.config	2020-04-09 13:31:20 +01:00
MaxUlysse	19316ce852	add viralrecon specific config	2020-04-09 13:40:35 +02:00
Daniel Lundin	e0f9374272	Update pipeline/ampliseq.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2020-03-31 15:33:19 +02:00
Daniel Lundin	5a557ed7d5	Update pipeline/ampliseq.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2020-03-31 15:33:12 +02:00
Daniel Lundin	79ef94de47	Update pipeline/ampliseq.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2020-03-31 15:33:04 +02:00
Daniel Lundin	c8de9be701	Adding UPPMAX specific config for ampliseq	2020-03-31 15:17:24 +02:00
Adrian Larkeryd	02d8b81af4	adding icr_davros as profiles	2020-03-04 16:02:11 +00:00
MaxUlysse	aa905cd645	add UPPMAX specific sarek config	2020-02-20 17:14:18 +01:00
Alexander Peltzer	a6d08ed646	Adjust custom pipeline config for ampliseq on BINAC	2019-12-11 16:09:44 +01:00