Alexander Peltzer
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5e6981d0ee
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Export TZ in binac config
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2019-12-11 15:59:25 +01:00 |
|
Alexander Peltzer
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ac90acf470
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Update envWhiteList for Binac Profile for testing purposes
Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114
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2019-12-11 14:26:57 +01:00 |
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James A. Fellows Yates
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0beb98696f
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Merge branch 'master' into master
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2019-12-06 19:31:24 +01:00 |
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James A. Fellows Yates
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8747be8120
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More tweaks, nextflow appears to add a little extra?
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2019-12-06 19:27:16 +01:00 |
|
James A. Fellows Yates
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5c6760b2f0
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Tweak back again
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2019-12-06 19:25:07 +01:00 |
|
James A. Fellows Yates
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46f6d20a77
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Put parameters back to correct levels
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2019-12-06 19:13:29 +01:00 |
|
James A. Fellows Yates
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18931763fa
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Add space?
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2019-12-06 19:11:08 +01:00 |
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James A. Fellows Yates
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f59443daf0
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Update shh.config
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2019-12-06 19:09:20 +01:00 |
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James A. Fellows Yates
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1ab1370872
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Try to make resources satisfiable
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2019-12-06 19:06:05 +01:00 |
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James A. Fellows Yates
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6e596d1730
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Fix stupid wrong bracket typo -.-
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2019-12-06 18:37:39 +01:00 |
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James A. Fellows Yates
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b28e1a0905
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Wrong bracket typo fix -.-
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2019-12-06 18:34:18 +01:00 |
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Alexander Peltzer
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1f7940c2ee
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Merge pull request #104 from jfy133/master
Attempt to fix process specific configs with pipeline specific configs
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2019-12-06 17:16:37 +01:00 |
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jfy133
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e8b4675692
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Cleanup and tweaking
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2019-12-06 13:17:31 +01:00 |
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Maxime Garcia
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9497b78149
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Merge pull request #100 from MaxUlysse/UPPMAX
Improve UPPMAX configs
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2019-12-06 10:52:44 +01:00 |
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Maxime Garcia
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14864bb80b
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Update conf/uppmax.config
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2019-12-06 10:31:56 +01:00 |
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Alexander Peltzer
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da547b4ce3
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Merge pull request #102 from phue/cbe_singularity
cbe: load singularity/3.4.1
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2019-12-06 10:21:55 +01:00 |
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James A. Fellows Yates
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0033b74e4e
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Update shh.config
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2019-12-05 18:08:39 +01:00 |
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James A. Fellows Yates
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dc0f1dfb40
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Update shh.config
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2019-12-05 17:58:49 +01:00 |
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James A. Fellows Yates
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b1a8b45aa0
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Maybe typo?
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2019-12-05 17:52:53 +01:00 |
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jfy133
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731372dac2
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Added SHH specific EAGER configuration
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2019-12-05 17:01:10 +01:00 |
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phue
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381c60e7b7
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cbe: load singularity/3.4.1
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2019-12-05 16:06:32 +01:00 |
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MaxUlysse
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a63ec24626
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Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX
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2019-12-05 15:18:04 +01:00 |
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MaxUlysse
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99afe86ea9
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update docs
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2019-12-05 15:18:01 +01:00 |
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MaxUlysse
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f41d325873
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automatic configs work on all nodes
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2019-12-05 15:07:59 +01:00 |
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Maxime Garcia
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78826c9d4e
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Merge branch 'master' into UPPMAX
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2019-12-05 12:52:34 +01:00 |
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Alexander Peltzer
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9cdb915efb
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Merge pull request #101 from jfy133/master
Condensing SHH profile(s) with sub-profiles
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2019-12-05 12:51:31 +01:00 |
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MaxUlysse
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cf6e00d9f5
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better match for hostname
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2019-12-05 12:46:32 +01:00 |
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MaxUlysse
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20e451be3b
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actually define hostname
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2019-12-05 12:45:30 +01:00 |
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MaxUlysse
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0211b33a55
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trying automatic configuration based on hostname
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2019-12-05 12:41:18 +01:00 |
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James A. Fellows Yates
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842642a2bb
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Apply suggestions from code review
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:36 +01:00 |
|
James A. Fellows Yates
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678a3841b6
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Update conf/shh.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:06 +01:00 |
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jfy133
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54dafbcfa3
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Condensing SHH profiles following https://github.com/nf-core/configs/pull/100
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2019-12-05 12:09:11 +01:00 |
|
MaxUlysse
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cdbdbee0eb
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replace -profile uppmax_devel by -profile uppmax,devel
|
2019-12-05 11:49:44 +01:00 |
|
Sabrina Krakau
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2eed8f7429
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Lowered max. memory for cfc
|
2019-11-28 12:49:02 +01:00 |
|
Olga Botvinnik
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f57e00e87d
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Set awsqueue parameter properly
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2019-11-27 15:57:09 -08:00 |
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Alexander Peltzer
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4f77eae5cf
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Mini adjustment for highmem queue on denbi
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2019-11-27 14:23:01 +01:00 |
|
Maxime Garcia
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2669401a72
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Merge branch 'master' into sarek
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2019-11-27 13:27:43 +01:00 |
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Alexander Peltzer
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5e0e3e0567
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Merge pull request #96 from jfy133/master
Splitting SHH config to one per cluster
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2019-11-27 12:06:54 +01:00 |
|
Alexander Peltzer
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54719c4761
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Merge pull request #95 from ggabernet/master
Update max memory for cfc profile
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2019-11-26 21:21:07 +01:00 |
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James A. Fellows Yates
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c725c71e4d
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Merge branch 'master' into master
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2019-11-26 20:34:42 +01:00 |
|
jfy133
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6f40c13473
|
Split shh config for each cluster
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2019-11-26 20:20:17 +01:00 |
|
phue
|
88b5be3060
|
Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes
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2019-11-26 18:08:43 +01:00 |
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ggabernet
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834f4b4179
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updated memory cfc config
|
2019-11-26 17:30:41 +01:00 |
|
Alexander Peltzer
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ee99d7f2d4
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Merge pull request #94 from apeltzer/master
Mini Cosmetic Fixes for README
|
2019-11-26 16:24:30 +01:00 |
|
Alexander Peltzer
|
b756ce54a4
|
Add genotoul fix
|
2019-11-26 16:09:08 +01:00 |
|
Alexander Peltzer
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81739a3907
|
Merge pull request #93 from jfy133/master
Updated max resources for SHH SDAG
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2019-11-26 15:56:39 +01:00 |
|
James A. Fellows Yates
|
c3d27099ca
|
Updated authors
|
2019-11-26 15:26:05 +01:00 |
|
James A. Fellows Yates
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ca6ddcadb0
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Matching max CPUs to SDAG (supercruncher8)
|
2019-11-26 15:25:35 +01:00 |
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MaxUlysse
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6f638b7ad4
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Merge branch 'sarek' of github.com:MaxUlysse/nf-core_configs into sarek
|
2019-11-26 15:22:02 +01:00 |
|
MaxUlysse
|
25f3bd68f8
|
container = null
|
2019-11-26 15:21:53 +01:00 |
|