Rike
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6221b67bcf
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Give Strelka a complete compute node
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2021-03-18 11:11:02 +01:00 |
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Rike
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b1846af9d3
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reduce mapping resource further to compute node
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2021-03-18 11:10:00 +01:00 |
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FriederikeHanssen
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67c93a4743
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Update conf/pipeline/sarek/cfc.config
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
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2021-03-18 11:06:38 +01:00 |
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Rike
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b70097e495
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remove new line
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2021-03-17 15:46:18 +01:00 |
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Rike
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bb124a9be8
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Reduce vc to run on compute
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2021-03-11 16:11:41 +01:00 |
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FriederikeHanssen
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79ddbe1fea
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Add missing bracket
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2021-03-11 09:29:03 +01:00 |
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FriederikeHanssen
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0057132e02
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remove check_reource statement
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2021-03-11 09:27:08 +01:00 |
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FriederikeHanssen
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eb9012919c
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Set values for processes with max_mem/max_cpus
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2021-03-10 11:16:18 +01:00 |
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drpatelh
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01a4f8559e
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Update links to be consistent
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2021-02-16 13:17:16 +00:00 |
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Harshil Patel
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6ffaf922c5
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Update genomes.config
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2021-02-16 10:28:32 +00:00 |
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Harshil Patel
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4de0855218
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Update genomes.config
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2021-02-15 18:48:03 +00:00 |
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drpatelh
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9d500cf679
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Reorder params
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2021-02-15 17:02:26 +00:00 |
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drpatelh
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f283dfb2dc
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Add ARTIC primer sets to genome config
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2021-02-15 16:58:30 +00:00 |
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James A. Fellows Yates
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86566ddd3b
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Merge pull request #204 from jfy133/master
Add a 'big_data' profile for eager @ SHH
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2021-02-04 15:07:52 +01:00 |
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James A. Fellows Yates
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e32f1e46ff
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Update shh.config
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2021-02-04 08:13:16 +01:00 |
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James A. Fellows Yates
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c515a401c7
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Update shh.config
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2021-02-04 08:06:35 +01:00 |
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James A. Fellows Yates
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82fe8a04be
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Update shh.config
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2021-02-04 08:02:33 +01:00 |
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James A. Fellows Yates
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e7ac0bae13
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Update shh.config
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2021-02-04 08:00:57 +01:00 |
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James A. Fellows Yates
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eb725f9ea3
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Update shh.config
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2021-02-03 20:13:09 +01:00 |
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James A. Fellows Yates
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1c25cb033b
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Add big_data profile
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2021-01-19 13:53:01 +01:00 |
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James A. Fellows Yates
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a4c55b3ea9
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Fix time limit 0-9 typo
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2021-01-06 10:44:12 +01:00 |
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Combiz Khozoie
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a61992d144
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Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO
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2020-12-18 10:21:26 +00:00 |
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Emelie Nilsso
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febf38dd8e
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Removed an old process so that only relevant processes are included
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2020-11-26 13:38:47 +01:00 |
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Emelie Nilsso
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d61ed01d2d
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Updated process names according to ampliseq main.nf
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2020-11-25 17:50:30 +01:00 |
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Emelie Nilsso
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37e7cfae2c
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Removed unnecessary code that was used to troubleshoot
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2020-11-24 07:14:23 +01:00 |
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Emelie Nilsso
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2ea06ffab8
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Modified uppmax and ampliseq specific config to fit with the divided preparation of the database
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2020-11-23 21:20:36 +01:00 |
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James A. Fellows Yates
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804f53c58c
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Merge pull request #178 from jfy133/master
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
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2020-10-22 13:34:11 +02:00 |
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MaxUlysse
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8c0cc4b9ec
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code polishing
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2020-09-25 09:57:50 +02:00 |
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MaxUlysse
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81f910cc95
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add specific BamQC config
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2020-09-25 09:49:43 +02:00 |
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MaxUlysse
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fbe7bd133a
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update uppmax specific sarek config
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2020-09-25 08:33:53 +02:00 |
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James A. Fellows Yates
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11f1fb71db
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Update mpcdf.config
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2020-09-16 10:21:58 +02:00 |
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James A. Fellows Yates
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c6f7573d01
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Update mpcdf.config
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2020-09-15 17:48:54 +02:00 |
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James A. Fellows Yates
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bf87ec24e7
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Update mpcdf.config
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2020-09-15 17:45:38 +02:00 |
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James A. Fellows Yates
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3b7902d11b
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Mad multi-core increase CPUs on retry
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2020-09-06 08:23:35 +02:00 |
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James A. Fellows Yates
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4335e5deb7
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Update mpcdf.config
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2020-09-04 20:17:09 +02:00 |
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James A. Fellows Yates
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b4e275c3b9
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Add MPCDF for EAGER
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2020-09-04 19:57:25 +02:00 |
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James A. Fellows Yates
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5c7ab234b6
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Create mpcdf.config
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2020-09-04 19:55:40 +02:00 |
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James A. Fellows Yates
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c3fa87e4bc
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Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH
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2020-08-11 09:18:36 +02:00 |
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James A. Fellows Yates
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57ac9257a9
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Remove now deprecated EAGER flag for HOPS profile
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2020-07-20 11:29:12 +02:00 |
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James A. Fellows Yates
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84e03b8264
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Re-bump default walltimes after debugging/testing
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2020-07-11 18:31:04 +02:00 |
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James A. Fellows Yates
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8f6409d144
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Remove min support percent value to avoid confusion
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2020-07-08 15:26:19 +02:00 |
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James A. Fellows Yates
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1af9ce293c
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Update hops profile based on requests from pathogen group
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2020-07-08 15:22:33 +02:00 |
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James A. Fellows Yates
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c57a404f18
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Add desc for hops
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2020-07-08 10:45:43 +02:00 |
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jfy133
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15dad7e2e7
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Add caveats for EAGER @ SHH profiles
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2020-07-08 09:47:03 +02:00 |
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jfy133
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926c14f7ee
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Cleverer process time submission
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2020-07-08 09:36:56 +02:00 |
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jfy133
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563c27e1bb
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Try again to get better time resource submission
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2020-07-08 09:36:28 +02:00 |
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James A. Fellows Yates
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c6905b609e
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Update shh.config
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2020-07-08 09:25:21 +02:00 |
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James A. Fellows Yates
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b360ce26bc
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Update shh.config
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2020-07-08 09:24:06 +02:00 |
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James A. Fellows Yates
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31edb4b5d7
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Update shh.config
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2020-07-08 09:20:00 +02:00 |
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James A. Fellows Yates
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aac3478e86
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Add better task time values to account for large data
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2020-07-08 09:12:11 +02:00 |
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