Maxime Garcia
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79528de92f
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Update docs/uppmax.md
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
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2019-12-06 10:47:09 +01:00 |
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Maxime Garcia
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14864bb80b
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Update conf/uppmax.config
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2019-12-06 10:31:56 +01:00 |
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Alexander Peltzer
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da547b4ce3
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Merge pull request #102 from phue/cbe_singularity
cbe: load singularity/3.4.1
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2019-12-06 10:21:55 +01:00 |
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phue
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fa777180e6
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cbe: map hostname
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2019-12-05 23:46:25 +01:00 |
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James A. Fellows Yates
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0033b74e4e
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Update shh.config
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2019-12-05 18:08:39 +01:00 |
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James A. Fellows Yates
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dc0f1dfb40
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Update shh.config
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2019-12-05 17:58:49 +01:00 |
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James A. Fellows Yates
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b1a8b45aa0
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Maybe typo?
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2019-12-05 17:52:53 +01:00 |
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James A. Fellows Yates
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ab6c5f05ac
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Merge pull request #7 from nf-core/master
syncing
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2019-12-05 17:37:17 +01:00 |
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James A. Fellows Yates
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0467b44f21
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Merge pull request #103 from jfy133/master
EAGER Pipeline specific config for SHH
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2019-12-05 17:21:18 +01:00 |
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jfy133
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1650080b6e
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Linting
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2019-12-05 17:03:07 +01:00 |
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jfy133
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731372dac2
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Added SHH specific EAGER configuration
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2019-12-05 17:01:10 +01:00 |
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James A. Fellows Yates
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0a3821ce78
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Merge pull request #6 from nf-core/master
Syncing
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2019-12-05 16:14:52 +01:00 |
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phue
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381c60e7b7
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cbe: load singularity/3.4.1
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2019-12-05 16:06:32 +01:00 |
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MaxUlysse
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a63ec24626
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Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX
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2019-12-05 15:18:04 +01:00 |
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MaxUlysse
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99afe86ea9
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update docs
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2019-12-05 15:18:01 +01:00 |
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MaxUlysse
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f41d325873
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automatic configs work on all nodes
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2019-12-05 15:07:59 +01:00 |
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Maxime Garcia
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78826c9d4e
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Merge branch 'master' into UPPMAX
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2019-12-05 12:52:34 +01:00 |
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Alexander Peltzer
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9cdb915efb
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Merge pull request #101 from jfy133/master
Condensing SHH profile(s) with sub-profiles
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2019-12-05 12:51:31 +01:00 |
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MaxUlysse
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cf6e00d9f5
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better match for hostname
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2019-12-05 12:46:32 +01:00 |
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MaxUlysse
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20e451be3b
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actually define hostname
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2019-12-05 12:45:30 +01:00 |
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MaxUlysse
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0211b33a55
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trying automatic configuration based on hostname
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2019-12-05 12:41:18 +01:00 |
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James A. Fellows Yates
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842642a2bb
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Apply suggestions from code review
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:36 +01:00 |
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James A. Fellows Yates
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678a3841b6
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Update conf/shh.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:06 +01:00 |
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jfy133
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3fc1377ff2
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Remove mysterious new line
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2019-12-05 12:16:01 +01:00 |
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jfy133
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41a795f996
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Fixed github actions test
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2019-12-05 12:14:01 +01:00 |
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jfy133
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54dafbcfa3
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Condensing SHH profiles following https://github.com/nf-core/configs/pull/100
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2019-12-05 12:09:11 +01:00 |
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MaxUlysse
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a79dfdf223
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remove uppmax_devel profile
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2019-12-05 12:03:04 +01:00 |
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MaxUlysse
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cdbdbee0eb
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replace -profile uppmax_devel by -profile uppmax,devel
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2019-12-05 11:49:44 +01:00 |
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Alexander Peltzer
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657345fa70
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Merge pull request #99 from nf-core/adjust_cfc_mem
Lowered max. memory for cfc
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2019-11-28 13:35:47 +01:00 |
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Sabrina Krakau
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2eed8f7429
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Lowered max. memory for cfc
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2019-11-28 12:49:02 +01:00 |
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Alexander Peltzer
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fd68a2fbfb
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Merge pull request #98 from nf-core/olgabot-patch-1
Set awsqueue parameter properly
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2019-11-28 12:36:21 +01:00 |
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Olga Botvinnik
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f57e00e87d
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Set awsqueue parameter properly
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2019-11-27 15:57:09 -08:00 |
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Sabrina Krakau
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a7ac981cca
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Merge pull request #97 from apeltzer/master
Mini adjustment for `highmem` queue on denbi
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2019-11-27 14:58:14 +01:00 |
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Alexander Peltzer
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4f77eae5cf
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Mini adjustment for highmem queue on denbi
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2019-11-27 14:23:01 +01:00 |
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Maxime Garcia
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64ff62de2c
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Merge pull request #85 from MaxUlysse/sarek
Adding a pipeline specific config for a specific system
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2019-11-27 13:38:45 +01:00 |
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Maxime Garcia
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2669401a72
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Merge branch 'master' into sarek
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2019-11-27 13:27:43 +01:00 |
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MaxUlysse
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752fca0530
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fix level of hostname
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2019-11-27 13:25:52 +01:00 |
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MaxUlysse
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7f61d2f81b
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fix TOC
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2019-11-27 13:18:39 +01:00 |
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MaxUlysse
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8a73e7f2f8
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better explanation
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2019-11-27 13:16:08 +01:00 |
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Alexander Peltzer
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5e0e3e0567
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Merge pull request #96 from jfy133/master
Splitting SHH config to one per cluster
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2019-11-27 12:06:54 +01:00 |
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Alexander Peltzer
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54719c4761
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Merge pull request #95 from ggabernet/master
Update max memory for cfc profile
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2019-11-26 21:21:07 +01:00 |
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James A. Fellows Yates
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c725c71e4d
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Merge branch 'master' into master
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2019-11-26 20:34:42 +01:00 |
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jfy133
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e1c8c86d70
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Updated core config
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2019-11-26 20:26:59 +01:00 |
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jfy133
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c89ca84244
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Updated github actions test - typo fix
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2019-11-26 20:24:23 +01:00 |
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jfy133
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e6bf470962
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Updated github actions test
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2019-11-26 20:23:04 +01:00 |
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jfy133
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6f40c13473
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Split shh config for each cluster
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2019-11-26 20:20:17 +01:00 |
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Patrick Hüther
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8a9c321e44
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Merge pull request #90 from phue/cbe_iGenomes
cbe: roll out iGenomes
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2019-11-26 18:15:30 +01:00 |
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phue
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672f025639
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cbe: add documentation about iGenomes
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2019-11-26 18:09:20 +01:00 |
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phue
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88b5be3060
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Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes
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2019-11-26 18:08:43 +01:00 |
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ggabernet
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834f4b4179
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updated memory cfc config
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2019-11-26 17:30:41 +01:00 |
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