184 commits

Author	SHA1	Message	Date
ameynert	791f3c95f3	Pipeline specific configs moving to confs/pipeline	2021-03-23 16:07:07 +00:00
ameynert	b48136a62e	Added pipeline-specific config files	2021-03-18 12:55:03 +00:00
ameynert	af6a6b1060	Details on running on eddie ... Removed Conda support, Singularity by default. Added login and screen session on wild west node options.	2021-03-18 12:48:48 +00:00
ameynert	4ad6bb2bec	Singularity info	2021-03-17 14:50:40 +00:00
ameynert	4c0111f598	Eddie profile documentation initial commit	2021-03-04 14:46:58 +00:00
Charles Plessy	1608b36dcf	Institutional profile for Okinawa Institute of Science and Technology	2021-02-02 17:40:10 +09:00
James A. Fellows Yates	c4604450d8	Update seg_globe.md	2021-01-21 13:04:12 +01:00
Åshild J. Vågene	bcd137225e	Update and rename ceh.md to seg_globe.md	2021-01-21 11:46:46 +01:00
Åshild J. Vågene	ef80452577	Update docs/ceh.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2021-01-21 11:16:46 +01:00
James A. Fellows Yates	2fd475c339	Fix some linting errors	2021-01-21 06:30:43 +01:00
Åshild J. Vågene	d108666950	Update ceh.md	2021-01-21 00:30:54 +01:00
Åshild J. Vågene	65831b73ef	Create ceh.md	2021-01-21 00:17:08 +01:00
Combiz Khozoie	a61992d144	Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO	2020-12-18 10:21:26 +00:00
arontommi	ac108379cd	trailing spaces	2020-11-26 13:58:16 +01:00
arontommi	c2c7265518	fix linting errors	2020-11-26 13:47:47 +01:00
arontommi	6480aef1db	typo	2020-11-26 11:41:33 +01:00
arontommi	f84fbb8f89	typo	2020-11-26 11:39:51 +01:00
arontommi	e6bb7a4852	capital names	2020-11-26 11:37:59 +01:00
arontommi	5726ef3456	typo	2020-11-26 11:26:08 +01:00
arontommi	06469901fe	typo	2020-11-26 11:24:29 +01:00
arontommi	ebf754bf43	documentation for bianca	2020-11-26 09:53:51 +01:00
Phil Ewels	e96455e180	Update docs/uppmax.md	2020-11-26 01:43:09 +01:00
Phil Ewels	d9a8009662	Better UPPMAX docs	2020-11-25 22:45:16 +01:00
Andrew Frank	d70fc2605a	Fix parameters in google.md ... Change parameters from hyphens to underscores to accurately reflect google.config	2020-11-12 11:52:58 -05:00
lecorguille	e3d733d87e	Add ABiMS - fix lint	2020-10-23 09:29:54 +02:00
lecorguille	4d03f72c78	Add ABiMS - last bits of doc	2020-10-23 09:27:12 +02:00
lecorguille	6ee6b7bf56	Add ABiMS - remove a useless link	2020-10-23 00:12:02 +02:00
lecorguille	23ba1c58b1	Add ABiMS - NXF_SINGULARITY_CACHEDIR	2020-10-23 00:11:58 +02:00
lecorguille	f21d16b24f	Add ABiMS - fix lint	2020-10-22 17:47:25 +02:00
lecorguille	a63ca751ee	Add ABiMS	2020-10-22 16:57:41 +02:00
James A. Fellows Yates	7088ed196f	Update mpcdf.md	2020-10-22 11:08:29 +02:00
James A. Fellows Yates	0d6e269322	Update mpcdf.md	2020-10-15 14:24:08 +02:00
James A. Fellows Yates	9df85be081	Update mpcdf.md	2020-09-03 20:27:15 +02:00
James A. Fellows Yates	09cd5cad65	Update mpcdf.md	2020-09-03 20:25:37 +02:00
James A. Fellows Yates	0501ae4c1a	Started docs for mpcdf	2020-09-03 20:21:49 +02:00
James A. Fellows Yates	09cfabd37f	Add new microbiome_screening profile to docs	2020-08-11 09:20:31 +02:00
drpatelh	165af5122f	Update docs	2020-08-03 11:39:23 +01:00
jfy133	15dad7e2e7	Add caveats for EAGER @ SHH profiles	2020-07-08 09:47:03 +02:00
James A. Fellows Yates	b2e043ab59	Add documentation for HOPS profile for eager @ SHH	2020-07-07 14:35:42 +02:00
Phil Ewels	cd9fbb22dc	Merge pull request #161 from ewels/uct_hpc ... Update UCT hex -> hpc	2020-06-22 09:18:43 +02:00
Phil Ewels	29f5fa6ce4	uct_hpc docs, readme	2020-06-17 15:22:42 +02:00
Phil Ewels	17824d2d62	Merge czbiohub_aws_highpriority profile into czbiohub_aws	2020-06-16 15:20:39 +02:00
phue	6d356cc918	CBE: don't load singularity module ... singularity is now installed from CentOS repos, the environment module will be removed	2020-06-05 12:07:26 +02:00
Alexander Peltzer	f877644059	Merge branch 'master' into master	2020-05-29 11:43:47 +02:00
Alexander Peltzer	dd56355c7c	Update bi.md ... No trailing spaces it said.	2020-05-28 10:18:16 +02:00
Alexander Peltzer	f4df5b5a75	Add BI Docs	2020-05-28 10:16:22 +02:00
Alexander Peltzer	6011419454	Merge pull request #154 from jfy133/master ... Update SHH nf-core/eager group-specific profiles	2020-05-27 17:52:09 +02:00
James A. Fellows Yates	0943ba088a	Mention SHH EAGER group-specific profiles	2020-05-26 11:14:42 +02:00
James A. Fellows Yates	2e3b577fb3	Typo fixes ... I'll never forgive our directory for that name...	2020-05-07 11:50:11 +02:00
James A. Fellows Yates	38e9e54932	Merge pull request #151 from jfy133/master ... Add additional custom nf-core/eager params for SHH profile	2020-05-07 09:25:02 +02:00