1481 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Venkat Malladi	306c802b4e	Fix name of Params	2021-12-16 09:27:23 -06:00
PCQ	698555f801	Rename marvin.conf to marvin.config	2021-12-15 14:44:05 +01:00
Maxime U. Garcia	58fe1a5808	Merge pull request #307 from nf-core/praveenraj2018-patch-1 ... Renamed star_index directory	2021-12-14 21:38:15 +01:00
praveenraj2018	00a3ed0fa6	Formatting	2021-12-14 21:24:18 +01:00
praveenraj2018	0557f4e062	Renamed star_index directory	2021-12-14 21:15:12 +01:00
praveenraj2018	e4410065f3	Merge pull request #306 from praveenraj2018/rnavar_munin ... Added rnavar pipeline config for Munin	2021-12-14 16:10:59 +01:00
Maxime U. Garcia	5e92e2ef11	Update conf/pipeline/rnavar/munin.config	2021-12-14 16:10:31 +01:00
Praveen	4c6e7262c2	Updated README.md	2021-12-14 04:04:17 +01:00
Praveen	cc1fe5b5a0	Addressed review feedback	2021-12-14 03:58:54 +01:00
Praveen	b4d5330c0e	Added rnavar pipeline config for Munin	2021-12-14 03:52:37 +01:00
PCQ	3a61adb69b	Rename Marvin.conf to marvin.conf	2021-12-13 11:38:48 +01:00
PCQ	2d02848075	added marvin.md link	2021-12-10 17:40:44 +01:00
PCQ	a72f1a243c	Create marvin.md	2021-12-10 17:39:32 +01:00
PCQ	a8bdd102e2	added path to Marvin.conf	2021-12-10 17:13:47 +01:00
PCQ	50d90cd686	Marvin Cluster addition ... Added the config for the Marvin cluster of the Universitat Pompeu Fabra (UPF)	2021-12-10 17:11:43 +01:00
James A. Fellows Yates	71b17ff970	Merge pull request #301 from jfy133/eva ... eager@eva: and bump the second samtools_flagstat process overhead 🙄	2021-12-07 11:04:33 +01:00
James A. Fellows Yates	55f452d81e	Update eva.config	2021-12-07 09:27:28 +01:00
James A. Fellows Yates	f7b5a8e800	Merge pull request #300 from jfy133/eva ... eager @ eva: reintroduce bionode8, bump overhead for flagstat	2021-12-03 11:16:24 +01:00
James Fellows Yates	e8252ad61c	Reintroduce bionode8, bump overhead for flagstat	2021-12-03 08:36:31 +01:00
James A. Fellows Yates	f8246b8554	Merge pull request #299 from jfy133/eva ... Exclude bionode8 for eager@eva	2021-12-02 10:57:44 +01:00
James Fellows Yates	06b40798c0	Exclude bionode8	2021-12-02 10:35:35 +01:00
Venkat Malladi	7a49a66b36	Merge pull request #298 from vsmalladi/azure ... Fix Azure Markdown	2021-11-18 23:52:24 -06:00
Edmund Miller	61c7a9c4f1	chore: Change to one template	2021-11-18 21:23:21 -06:00
Edmund Miller	2c45f2a124	Apply suggestions from code review ... Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>	2021-11-18 21:18:34 -06:00
Venkat Malladi	d722e7206e	Fix readme to remove blob account.	2021-11-18 18:06:54 -06:00
Venkat Malladi	c0bf71bb6c	Merge branch 'master' into azure	2021-11-18 18:06:04 -06:00
Phil Ewels	0725e8d382	Merge pull request #225 from jfy133/doc-update ... Make more explicit which files you must update	2021-11-19 00:56:50 +01:00
Phil Ewels	4785ceccba	Merge pull request #245 from ikeller/unibe_ibu ... Unibe ibu	2021-11-19 00:56:25 +01:00
Phil Ewels	291fcb20a5	Merge pull request #297 from vsmalladi/azure ... Add in template for Azure Workflow	2021-11-19 00:55:54 +01:00
Venkat Malladi	1312949768	Merge branch 'azure' of github.com:vsmalladi/configs into azure	2021-11-18 17:55:37 -06:00
Venkat Malladi	46182c7439	Fix markdown linting erros.	2021-11-18 17:55:16 -06:00
Phil Ewels	b25bd1ce42	Update docs/azurebatch.md	2021-11-19 00:54:39 +01:00
Venkat Malladi	72ccd44ad6	Remove storage name.	2021-11-18 17:52:51 -06:00
Venkat Malladi	ed4c1d5f22	Remove work_dir option.	2021-11-18 17:52:24 -06:00
Phil Ewels	286fa6753a	Apply suggestions from code review	2021-11-19 00:07:33 +01:00
Phil Ewels	e090bbd5fe	Merge pull request #241 from asafpr/master ... replaced owner in JAX	2021-11-19 00:03:11 +01:00
Phil Ewels	a26b3bf1e3	Merge branch 'master' into unibe_ibu	2021-11-19 00:02:30 +01:00
Phil Ewels	15080d958e	Merge pull request #283 from aunderwo/master ... change max_time diretcive in the correct place	2021-11-19 00:00:52 +01:00
Venkat Malladi	13a8d7aebe	Fix spelling.	2021-11-18 15:51:12 -06:00
Venkat Malladi	f25dc57f00	Fix headers.	2021-11-18 15:50:12 -06:00
Venkat Malladi	1dacc2f3fe	Fix liniting errors in headers.	2021-11-18 15:49:08 -06:00
Venkat Malladi	845a9ce971	Update Readme with more inforamtion on the options.	2021-11-18 15:47:27 -06:00
Venkat Malladi	219244f1b4	Add in sample datastorage for Illumina Platinum genomes.	2021-11-18 15:28:34 -06:00
Venkat Malladi	b1a9c2e4c6	Add in fake key.	2021-11-18 15:20:59 -06:00
Venkat Malladi	a8075ee938	Fix configuration to pass.	2021-11-18 15:15:23 -06:00
Venkat Malladi	237f91a3b7	Add in minmum config for azure.	2021-11-18 14:51:39 -06:00
Maxime U. Garcia	0866682e9b	Merge pull request #296 from drpatelh/hostnames ... Add Chris as main contact at The Crick	2021-11-03 13:30:51 +01:00
Harshil Patel	a098ad9e06	Add Chris as main contact at The Crick	2021-11-03 11:11:05 +00:00
Phil Ewels	556a1cf344	Merge pull request #294 from ewels/master ... UPPMAX profile - minor tweaks	2021-11-03 00:02:17 +01:00
Phil Ewels	501db6bd2b	Update conf/uppmax.config ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2021-11-02 23:55:27 +01:00