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Author SHA1 Message Date
maxibor
efd831a8a3 add automounts for singularity 2019-04-25 15:48:20 +02:00
Alexander Peltzer
7d7c18273b
Merge pull request #41 from tobsecret/master 
Added configs for NYU clusters BigPurple (NYU Med) and Prince (NYU main campus)

Last PR merge before Easter holiday ;-)
 2019-04-19 00:13:49 +02:00
Tobias Schraink
d91b06d884 added missing line in prince and bigpurple docs 2019-04-18 14:25:27 -04:00
Tobias Schraink
b6c1d3ba51 added bigpurple and prince doc links in README 2019-04-18 14:23:17 -04:00
Tobias Schraink
4ba831705d added nyu prince and bigpurple md files, added singularity cacheDir to prince and bigpurple configs 2019-04-18 14:13:02 -04:00
Alexander Peltzer
f699c3ad18
Merge pull request #40 from maxibor/master 
Add iGenomes basePath for SHH
 2019-04-18 12:21:22 +02:00
maxibor
9d9ac4c3bb remove whitespace 2019-04-18 11:22:54 +02:00
maxibor
c41dd2c65f Merge branch 'master' of https://github.com/nf-core/configs 2019-04-18 11:21:27 +02:00
maxibor
1772f4119c adding igenomes to shh config 2019-04-18 11:19:53 +02:00
Tobias Schraink
4a915e330a added warnings to run on SCRATCH 2019-04-17 17:15:16 -04:00
Tobias Schraink
51c2a54399 added nyu prince and bigpurple configs 2019-04-17 16:59:38 -04:00
James A. Fellows Yates
37ae0fa3a6
Merge pull request #38 from maxibor/master 
add queueSize limited to 5 for SHH short queue
 2019-03-20 13:52:59 +01:00
maxibor
76a5fcf077 switch to queueSize 16 for shh config 2019-03-20 13:44:13 +01:00
maxibor
0929349303 add queueSize limited to 5 2019-03-18 11:13:11 +01:00
Phil Ewels
009e8f52e3
Merge pull request #37 from KochTobi/patch-1 
Update cfc config
 2019-03-16 16:26:46 +01:00
KochTobi
aaa7be049a
Update cfc config 
* Change singularity version documentation
 2019-03-16 14:11:59 +01:00
Alexander Peltzer
d95b464e13
Merge pull request #35 from jfy133/master 
Updates to SHH config
 2019-03-15 09:56:44 +01:00
James A. Fellows Yates
ecb36dd8c2
Reduced memory and CPUs for cdag compatibility 
Also matches 'fair use' policy
 2019-03-14 21:26:43 +01:00
James A. Fellows Yates
e503a3a064
Added new cluster and singularity cache 2019-03-14 21:21:31 +01:00
James A. Fellows Yates
3da1373c14
Updated path to centralised singularity cache 2019-03-14 21:16:02 +01:00
James A. Fellows Yates
b4e8e271be
Merge pull request #3 from nf-core/master 
Syncing
 2019-03-14 21:13:48 +01:00
Phil Ewels
2e9a8642c0
Merge pull request #32 from phue/update-mendel-documentation 
MENDEL: remove singularity support
 2019-03-14 15:04:39 +01:00
Phil Ewels
79eb58bbb8
Merge pull request #34 from drpatelh/master 
Add hostname for Crick
 2019-03-13 18:04:26 +01:00
Harshil Patel
26c101a5ab
Alphabetical order 2019-03-13 16:53:30 +00:00
Harshil Patel
1843b2218c
Update nfcore_custom.config 2019-03-13 16:52:57 +00:00
Harshil Patel
857b0565c2
Update nfcore_custom.config 2019-03-13 16:51:45 +00:00
Harshil Patel
8bc975c8c3
Merge pull request #33 from ewels/master 
Removed params.config_profile_name, added params.hostnames
 2019-03-13 16:49:43 +00:00
Phil Ewels
d0ca05a221 ; 2019-03-13 17:33:23 +01:00
Phil Ewels
1191863e1c Removed params.config_profile_name, added params.hostnames 2019-03-13 17:19:34 +01:00
Phil Ewels
4ac14cd6aa
Merge pull request #30 from apeltzer/master 
Last bump for binac/cfc
 2019-03-13 09:15:04 +01:00
phue
13df59bfaf remove singularity support 
reasons:

* the kernel running on the compute nodes does not support overlayfs und thus containers downloaded from
  public registries won't run because they lack the /lustre mountpoint

* building containers manually using the Singularity file would work, however nf-core pipelines will stop
  providing these files in future releases
 2019-03-12 17:57:31 +00:00
Alexander Peltzer
b19887af10 Merge remote-tracking branch 'upstream/master' 2019-03-12 18:49:01 +01:00
Alexander Peltzer
fbf9397182 Bump 2019-03-12 18:48:29 +01:00
Alexander Peltzer
ee249ca7af
Merge pull request #31 from ewels/master 
Remove Travis requirement for PRs to be against dev branch
 2019-03-12 18:42:55 +01:00
Phil Ewels
eaa1c8360f Travis multiline yaml 2019-03-12 17:25:16 +01:00
Phil Ewels
a79564f0af Remove requirement for dev branch PRs 2019-03-12 17:02:24 +01:00
Alexander Peltzer
3ee7195fa8 Central resource for both binac and cfc now 2019-03-12 14:58:41 +01:00
Phil Ewels
1e2c0c3e04
Merge pull request #29 from apeltzer/master 
iGenomes Rollout on "Binac" too
 2019-03-11 18:26:19 +01:00
Alexander Peltzer
68b759d6ef Mini Update 2019-03-11 18:12:35 +01:00
Alexander Peltzer
f4f3c4e53b Roll out binac too 2019-03-11 14:29:42 +01:00
Alexander Peltzer
880adfbb98
Merge pull request #28 from nf-core/ewels-patch-1 
Remove incorrect comment in code example
 2019-03-08 17:05:56 +01:00
Phil Ewels
ef1aeafef6
Remove incorrect comment in code example 2019-03-08 16:41:47 +01:00
Phil Ewels
ceecc15ac8
Merge pull request #27 from apeltzer/master 
Add the TravisCI badge as we have tests now
 2019-03-08 16:38:15 +01:00
Alexander Peltzer
c8c150d67c Add the TravisCI badge as we have tests now 2019-03-08 13:39:25 +01:00
Phil Ewels
a2fa9d3f01
Merge pull request #24 from nf-core/dev 
Include config integration test
 2019-03-08 12:36:27 +01:00
Sven Fillinger
ba3d221af6 Corrects regex 2019-03-08 12:23:27 +01:00
Sven Fillinger
bbe0d30462 Fixes syntax error in travis script 2019-03-08 12:00:43 +01:00
Sven Fillinger
d4cd9b1f0a Corrects profile grep 2019-03-08 11:58:37 +01:00
Sven Fillinger
e401769698 Corrects NXF command line call 2019-03-08 10:54:41 +01:00
Sven Fillinger
7962f7d756 Iterates over profiles and calls Nextflow 2019-03-08 10:52:09 +01:00