millironx/nf-configs
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276 commits 4 branches 0 tags 1.9 MiB
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21 commits

Author SHA1 Message Date
phue
fb60856e40 point travis to local clone 
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added
configs it would always fail.

This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
 2019-09-23 13:57:58 +02:00
phue
d7e891a576 Revert "point travis to local clone" 
This reverts commit 014111b925.
 2019-09-23 13:55:43 +02:00
phue
014111b925 point travis to local clone 
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added
configs it would always fail.

This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
 2019-09-23 13:42:11 +02:00
drpatelh
91a5e64e1c Ignore czbiohub_aws 2019-08-01 09:42:50 +01:00
drpatelh
0326b56038 Add czbiohub back in 2019-07-31 22:48:22 +01:00
drpatelh
eb0e89eeaa Remove SCRATCH variable 2019-07-31 22:44:54 +01:00
drpatelh
6298f78bf4 .travis.yml 2019-07-31 21:33:47 +01:00
Phil Ewels
eaa1c8360f Travis multiline yaml 2019-03-12 17:25:16 +01:00
Phil Ewels
a79564f0af Remove requirement for dev branch PRs 2019-03-12 17:02:24 +01:00
Sven Fillinger
ba3d221af6 Corrects regex 2019-03-08 12:23:27 +01:00
Sven Fillinger
bbe0d30462 Fixes syntax error in travis script 2019-03-08 12:00:43 +01:00
Sven Fillinger
d4cd9b1f0a Corrects profile grep 2019-03-08 11:58:37 +01:00
Sven Fillinger
e401769698 Corrects NXF command line call 2019-03-08 10:54:41 +01:00
Sven Fillinger
7962f7d756 Iterates over profiles and calls Nextflow 2019-03-08 10:52:09 +01:00
Sven Fillinger
1dc523d726 Removes test config 2019-03-08 10:37:27 +01:00
Sven F
da1b4572d3
Update .travis.yml 2019-03-06 20:11:20 +01:00
Sven F
af81005563
Uses dev branch for now 2019-03-06 19:51:03 +01:00
Sven F
dcc2680ad5
Uses checked out config version 2019-03-06 18:32:14 +01:00
Sven Fillinger
fe9d85b23c Fixes unresolved var 2019-03-06 18:20:56 +01:00
Sven Fillinger
7ec2532b78 Points config version to current branch 2019-03-06 17:58:43 +01:00
Sven Fillinger
638f986f34 Adds profile integration tests 2019-03-06 17:42:14 +01:00