857 commits

Author	SHA1	Message	Date
Simon Pearce	81768e16a9	Merge branch 'nf-core:master' into crukmi	2022-09-01 10:20:25 +01:00
Simon Pearce	14a97ad0e8	Merge branch 'master' into crukmi	2022-09-01 10:07:24 +01:00
James Fellows Yates	b22e8b79c7	Fix cheaha config due to use of environmental variable	2022-09-01 11:01:23 +02:00
Kalayanee Chairat	9681716205	Update adcra.config ... Fixing typo	2022-09-01 15:11:18 +07:00
Kalayanee Chairat	700f14d828	Merge pull request #1 from nf-core/master ... Merging from master	2022-09-01 15:07:43 +07:00
Simon Pearce	864da0b5be	Merge branch 'master' into crukmi	2022-08-31 18:19:47 +01:00
SPearce	1e1ca1e96b	Incorporating executor options	2022-08-31 15:35:57 +01:00
Annick Renevey	51871ea6fc	rnafusion setup for hasta usage	2022-08-31 11:32:01 +02:00
Lara Ianov	08b62ede83	Merge pull request #404 from nf-core/cheaha_singularity_update ... Cheaha Config Update	2022-08-30 14:45:50 -05:00
James A. Fellows Yates	c70a95f9c9	Merge branch 'master' into patch-2	2022-08-29 08:23:31 +02:00
kalayaneech	93c4ba67a0	adding adcra configuration	2022-08-25 16:17:09 +07:00
Harshil Patel	8b9661825b	Replace NC_063383.1 fasta and gff and add Nextclade config	2022-08-24 15:21:44 +01:00
Harshil Patel	8dcfcfd856	Add monkeypox genome files to viralrecon genome config file	2022-08-24 12:13:17 +01:00
Austyn Trull	8d5ae4c3ab	Committing changes made by Brandon Wilk so that singularity containers will use scratch space	2022-08-23 15:30:13 -05:00
Ramprasad Neethiraj	9182b55acc	Merge branch 'master' into feat/hasta_update	2022-08-23 11:21:58 +02:00
Ramprasad Neethiraj	7ff2977a29	Merge branch 'master' of github.com:nf-core/configs into feat/hasta_update	2022-08-18 15:58:56 +02:00
Ramprasad Neethiraj	dd63dee7aa	update conf	2022-08-18 15:56:41 +02:00
Ramprasad Neethiraj	1c942759ea	update sentieon	2022-08-18 15:52:31 +02:00
Ramprasad Neethiraj	a6cce4ab6a	Merge branch 'master' into feat/hasta_java_memory_fix	2022-08-18 13:36:08 +02:00
SPearce	8ae3cba5e3	Reduce MPILEUP to 5GB	2022-08-15 11:35:59 +01:00
SPearce	0bfedde296	Initial attempt at a CRUKMI config file	2022-08-12 15:43:22 +01:00
Gwenna Breton	ffefefe0ab	Added contact emails	2022-08-08 16:11:55 +02:00
Gwenna Breton	6aa78833c3	Merge branch 'master' into medair	2022-08-01 16:46:55 +02:00
James A. Fellows Yates	0b47849532	Update mpcdf.config	2022-07-27 14:23:29 +02:00
Priyanka Surana	58508c4fbc	Sanger profile update	2022-07-20 13:14:42 +01:00
Nicolas Vannieuwkerke	f40825ac14	lower submission rate for vsc_ugent	2022-07-14 15:50:50 +02:00
Harshil Patel	2ab126fa4d	Update default Nextclade dataset to 2022-06-14T12:00:00Z	2022-07-11 18:28:41 +01:00
Gwenna Breton	4538e8aa36	Update medair.config ... - added path to singularity image for Sentieon - harmonized alignment	2022-07-07 13:41:42 +02:00
Gwennid	b6e2d03a02	Added Singularity cache dir	2022-07-06 13:59:35 +02:00
James A. Fellows Yates	a141ff626b	Merge branch 'master' into eva-java-correction	2022-07-04 13:35:50 +02:00
Gwenna Breton	b3a6e199ca	Merge branch 'nf-core:master' into medair	2022-07-01 17:02:56 +02:00
Nicolas Vannieuwkerke	8a74c517d4	Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix	2022-07-01 16:16:22 +02:00
Nicolas Vannieuwkerke	1e34595280	removed queue size limit	2022-07-01 16:16:18 +02:00
nvnieuwk	5ff845cde7	Merge branch 'master' into vsc-ugent-fix	2022-07-01 16:10:45 +02:00
Nicolas Vannieuwkerke	fa949a069e	added queuesize	2022-07-01 16:01:19 +02:00
Nicolas Vannieuwkerke	abfa3f47f4	lowered the job submit rate of vsc_ugent	2022-07-01 15:55:44 +02:00
Gwenna Breton	bb35d8e5d1	Added conf file for medair	2022-06-30 11:42:36 +02:00
Bruno Grande	6f0d9e6c43	Complete check_max() move to global config	2022-06-23 10:10:28 -07:00
Bruno Grande	a19d79f6ff	Move check_max() to global config	2022-06-23 09:44:16 -07:00
Bruno Grande	1c7230cb08	Add Sage-specific Sarek config	2022-06-23 09:15:42 -07:00
Bruno Grande	37121faf4a	Fix typoe with label name	2022-06-22 14:37:43 -07:00
Bruno Grande	ecd898584d	Handle Sarek-specific max labels	2022-06-22 13:54:13 -07:00
Bruno Grande	c7093dee13	Reduce max_memory to fit on an instance	2022-06-16 12:37:32 -07:00
James Fellows Yates	acabcbd9e8	Use _JAVA_OPTIONS instead	2022-06-15 15:27:40 +02:00
James Fellows Yates	76b0d1dd85	Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction	2022-06-15 15:22:25 +02:00
James Fellows Yates	58dd9d49c7	Move beforeScript exports to env scope	2022-06-15 15:21:20 +02:00
Emil Bertilsson	c8c795595a	Merge branch 'nf-core:master' into feat/hasta_java_memory_fix	2022-06-09 15:10:46 +02:00
Emil Bertilsson	72e995f326	Adds generic fix for java memory issue on slurm	2022-06-09 10:28:20 +02:00
Bruno Grande	2898736cbe	Add Sage Bionetworks nf-core configuration	2022-06-08 14:16:52 -07:00
Nicolas Vannieuwkerke	b6d38859f0	fix for singularity cache for vsc_ugent profile	2022-06-08 16:28:28 +02:00