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Author SHA1 Message Date
Maxime Garcia
43f6f55ba2 Update pipeline/sarek.config 2019-11-26 11:25:29 +01:00
MaxUlysse
25f6ab6dd9 add docs 2019-11-26 11:25:29 +01:00
MaxUlysse
cd1d0b5f8f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:25:29 +01:00
Alexander Peltzer
00db62416f
Merge pull request #89 from MaxUlysse/AWSBATCH 
Fix issues with awsbatch profile
 2019-11-26 11:23:15 +01:00
Maxime Garcia
1ce8ce0c55
Apply suggestions from code review 2019-11-26 11:00:24 +01:00
MaxUlysse
75c1fd5cd9 fix tests 2019-11-26 10:43:23 +01:00
Alexander Peltzer
7e3efcac5c
Enjoy 2019-11-26 00:59:09 +01:00
Alexander Peltzer
b60fa8109e
Shift some configs to params scope 2019-11-26 00:57:10 +01:00
Alexander Peltzer
3d7f5436b1
Its in workflows 2019-11-26 00:54:17 +01:00
Alexander Peltzer
5a1dbf2dc7
Rename configs tests 2019-11-26 00:52:39 +01:00
Alexander Peltzer
4062c8b4dc
Fix indentation 2019-11-26 00:51:08 +01:00
Alexander Peltzer
aeb2fb6dc0
Fix all the markdownlinting errors 2019-11-26 00:48:17 +01:00
Alexander Peltzer
2d16917473
Fix linting 2019-11-26 00:34:55 +01:00
Alexander Peltzer
64a3240a51
Fix linting 2019-11-26 00:29:04 +01:00
Alexander Peltzer
b084b9ad3c
Adds in GitHub Actions tests 2019-11-26 00:25:49 +01:00
noirot
9e5b76827f add genotoul in README.md 2019-11-25 16:37:00 +01:00
Noirot Céline
ed4436c1a6
Merge branch 'master' into master 2019-11-25 16:24:12 +01:00
noirot
42d968fd2a add genotoul in nfcore_custom 2019-11-25 16:23:25 +01:00
noirot
db51c49b2f Add genotoul config 2019-11-25 14:54:25 +01:00
Maxime Garcia
a283c5b7c4
Merge pull request #71 from MaxUlysse/master 
Add profiles that should be shared with all pipelines to configs
 2019-11-19 19:43:50 +01:00
MaxUlysse
cb1c2eacd0 Z->S 2019-11-19 16:36:51 +01:00
MaxUlysse
08a6b74825 add new profile to be shared: awsbatch 2019-11-19 14:16:06 +01:00
Alexander Peltzer
bc9ecf50ac
Update binac.config 
Upgrade to 3.4.2
 2019-11-11 13:56:17 +01:00
Alexander Peltzer
e66ca6f670
Merge pull request #83 from nf-core/cfc_new_singularity_test 
Update Singularity to 3.4.2 on CFC
 2019-11-11 13:55:01 +01:00
Alexander Peltzer
fd7bdecfb7
Merge pull request #84 from apeltzer/master 
Fix denbi docs
 2019-11-11 12:29:11 +01:00
Alexander Peltzer
3b6c9d0360
Fix denbi docs 2019-11-11 12:28:45 +01:00
Alexander Peltzer
f19ddb847d
Merge pull request #79 from apeltzer/master 
Fix for BinAC profile / resources etc pp
 2019-11-11 12:26:45 +01:00
Alexander Peltzer
d2603a134e
Add in denbi cloud configs 2019-11-11 12:26:19 +01:00
Alexander Peltzer
426017d727
Merge remote-tracking branch 'upstream/master' 2019-11-11 12:21:53 +01:00
Phil Ewels
6790dbd4a3
Merge pull request #82 from arontommi/dev 
documentation on how to fix bianca "Requested node configuration is not available" problem
 2019-11-08 15:07:07 +01:00
Phil Ewels
5e7d13df89
Update uppmax.md 2019-11-08 10:59:34 +01:00
Alexander Peltzer
16a0ba9fd5
Update cfc.config 2019-11-08 10:06:23 +01:00
arontommi
99f4d9b9bd documentation on how to fix bianca cluster configuration problem 2019-11-06 13:10:09 +01:00
James A. Fellows Yates
ebbf884ac5
Merge pull request #81 from maxibor/master 
Update shh doc
 2019-10-28 20:02:27 +01:00
maxibor
47a7d57db4 update shh doc 2019-10-28 16:09:00 +01:00
Alexander Peltzer
84178c2550
Merge pull request #80 from phue/remove_mendel 
MENDEL is no more
 2019-10-28 14:45:18 +01:00
phue
5a9dbe5d7c MENDEL is no more 
the cluster is no longer operational, was replaced by CBE
 2019-10-28 14:11:34 +01:00
Alexander Peltzer
eb6d23254d
Fix binac resources 2019-10-28 13:22:12 +01:00
Alexander Peltzer
e557ced184
Update max memory 2019-10-28 13:21:41 +01:00
Alexander Peltzer
06bd1ab79e
Merge branch 'master' into master 2019-10-28 13:21:08 +01:00
Alexander Peltzer
41e607e7f9
Fix expression 2019-10-28 13:17:39 +01:00
Alexander Peltzer
494aa8b53e
Mini fix 2019-10-28 13:15:54 +01:00
Alexander Peltzer
9299355890
Merge pull request #78 from nf-core/revert-43-master 
Revert "BINAC SMP / Short / Long Updates"
 2019-10-28 13:12:42 +01:00
Alexander Peltzer
5348b8c609
Revert "BINAC SMP / Short / Long Updates" 2019-10-28 13:12:31 +01:00
Alexander Peltzer
7951805fbf
Merge pull request #43 from apeltzer/master 
BINAC SMP / Short / Long Updates
 2019-10-28 13:09:56 +01:00
Alexander Peltzer
83fcc0b2ba
Adjust max memory 2019-10-28 13:09:30 +01:00
Harshil Patel
b23e9d5a9f
Merge pull request #77 from phue/igenomesIgnore_deprecated 
deprecate igenomesIgnore in favor of igenomes_ignore
 2019-10-28 11:05:48 +00:00
phue
18ed48f398 deprecate igenomesIgnore in favor of igenomes_ignore 
keep both for now until all the pipelines have been synced
 2019-10-28 11:38:24 +01:00
Patrick Hüther
8e5cc7838c
Merge pull request #76 from phue/cbe_dynamic 
cbe: dynamic qos logic
 2019-10-28 11:23:23 +01:00
phue
123f199b68 cbe: dynamic qos logic 2019-10-27 20:44:08 +01:00