1495 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
James A. Fellows Yates	97d57539e3	Apply suggestions from code review ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-06-03 12:51:20 +02:00
James Fellows Yates	5a67eba04c	Add MAG @ EVA profile	2022-06-03 12:41:08 +02:00
James Fellows Yates	e1f780d976	Add taxprofiler for eVA	2022-05-12 07:54:17 +01:00
Thiseas C. Lamnidis	65d07a3ead	Merge pull request #372 from nf-core/TCLamnidis-patch-1 ... Update eva.config	2022-05-06 15:53:03 +02:00
Thiseas C. Lamnidis	d09f5fc116	Update eva.config ... eigenstrat_snp_coverage also loads pandas	2022-05-06 15:12:04 +02:00
James A. Fellows Yates	8fbfcfe256	Merge pull request #371 from jfy133/master ... Rename custom log file for EVA	2022-05-06 14:02:03 +02:00
James A. Fellows Yates	95d18270e8	Update eva.config	2022-05-06 13:57:11 +02:00
Harshil Patel	15c938d05b	Merge pull request #370 from drpatelh/google ... Update retry strategy for preemptible instances on GCP	2022-05-05 11:22:36 +01:00
Harshil Patel	20c826fd50	Update retry strategy for preemptible instances on GCP	2022-05-05 11:10:05 +01:00
Thiseas C. Lamnidis	a543a3ebc6	Merge pull request #369 from TCLamnidis/master ... missing bracket in eager eva.config	2022-05-04 13:14:10 +02:00
Thiseas C. Lamnidis	209601f782	missing bracket	2022-05-04 13:08:13 +02:00
James A. Fellows Yates	c85342a9c9	Merge pull request #368 from TCLamnidis/master ... Update eva.config	2022-05-04 12:32:04 +02:00
Thiseas C. Lamnidis	a42c4344ad	Exclude bionode 06 for software versions	2022-05-03 18:30:42 +02:00
Thiseas C. Lamnidis	08edd19d67	Merge pull request #1 from TCLamnidis/TCLamnidis-patch-1	2022-05-03 17:46:54 +02:00
Thiseas C. Lamnidis	79e227aa4e	Update eva.config	2022-05-03 16:42:21 +02:00
Thiseas C. Lamnidis	085726d081	Update eva.config	2022-05-03 16:36:05 +02:00
Thiseas C. Lamnidis	4592969613	memory for get_software_versions in MB.	2022-05-03 16:30:04 +02:00
Thiseas C. Lamnidis	79ad571319	Update eva.config	2022-05-03 16:25:48 +02:00
Thiseas C. Lamnidis	04226692fe	Update eva.config	2022-05-03 16:21:35 +02:00
Thiseas C. Lamnidis	57095fe79f	Update eva.config ... Set max heap size for java jobs in `get_software_versions`. Limited OpenBLAS threading for python jobs that use numpy/pandas.	2022-05-03 16:12:20 +02:00
James A. Fellows Yates	d1c1b467c1	Merge pull request #366 from jfy133/master ... Add more memory to get_software_versions for eva @ EAGER	2022-05-02 14:54:26 +02:00
James A. Fellows Yates	b5d9b79377	Merge branch 'nf-core:master' into master	2022-05-02 13:59:18 +02:00
James A. Fellows Yates	bf658abc77	Update eva.config	2022-05-02 13:59:13 +02:00
James Fellows Yates	4885b672b1	Prettier	2022-04-25 11:46:32 +02:00
James A. Fellows Yates	b2d6fb6f5e	Merge pull request #365 from rajewski/master ... Cedars-Sinai HPC	2022-04-25 10:44:33 +02:00
Alex Rajewski	d261b3df78	add cedars-sinai	2022-04-22 10:29:22 -07:00
Alex Rajewski	aa2c3e256b	add cedars-sinai	2022-04-22 10:27:50 -07:00
Alex Rajewski	c60d73b565	add Cedars-Sinai HPC	2022-04-22 10:26:32 -07:00
Alex Rajewski	7d6482c652	Merge pull request #1 from rajewski/patch-1 ... usage notes	2022-04-22 10:24:33 -07:00
Alex Rajewski	766eb450be	usage notes	2022-04-22 10:23:19 -07:00
Alex Rajewski	69d1a14894	basic Cedars-Sinai HPC config file	2022-04-22 10:17:13 -07:00
James A. Fellows Yates	c1425c6c01	Merge pull request #364 from jfy133/eva-update ... Update eager @ eva.config to allow retry on post-processing FASTQ	2022-04-22 11:47:10 +02:00
James A. Fellows Yates	a086878c0b	Update eva.config	2022-04-22 10:47:04 +02:00
Maxime U. Garcia	e9d93d62e0	Merge pull request #362 from nf-core/praveenraj2018-patch-1 ... Update: sentieon version	2022-04-07 12:52:33 +02:00
Praveen Raj S	edaad1cd18	Update: sentieon version ... Sentieon version has been updated to 202112.02.	2022-04-07 12:36:01 +02:00
James A. Fellows Yates	d49b21efdc	Merge pull request #361 from jfy133/master ... Re-add accidently removed BWA bionode exclusions EAGER @ EVA	2022-03-31 14:11:54 +02:00
James A. Fellows Yates	44238471cf	Update eva.config	2022-03-31 13:12:50 +02:00
James A. Fellows Yates	f172cce8b2	Merge pull request #360 from jfy133/master ... Re-add bash bin specification for EVA	2022-03-31 12:58:06 +02:00
James Fellows Yates	2277b541a3	Re-add bash bin specification	2022-03-31 11:06:53 +02:00
James A. Fellows Yates	7cad02d327	Merge pull request #359 from jfy133/fix-eva ... Remove -S /bin/bash in clusteroptions for EVA	2022-03-29 13:51:41 +02:00
James A. Fellows Yates	8ad4ddac6a	Merge branch 'master' into fix-eva	2022-03-29 12:50:54 +02:00
James Fellows Yates	3d2a612b39	Remove setting of bash in clusterOotions	2022-03-29 12:48:37 +02:00
James A. Fellows Yates	576351219a	Update eva.config	2022-03-29 12:47:46 +02:00
James A. Fellows Yates	9e502025b9	Merge pull request #358 from aidaanva/master ... Update eva.config bigmem.q	2022-03-28 09:11:18 +02:00
James A. Fellows Yates	b0c9ac9be8	Update eva.md	2022-03-28 09:02:26 +02:00
Phil Ewels	1f872aea87	Merge pull request #357 from mahesh-panchal/uppmax-hostname-fix ... Execute sinfo with bash shell	2022-03-25 15:31:09 +01:00
Mahesh Binzer-Panchal	3a7f7f431e	Execute sinfo with bash shell	2022-03-25 13:58:37 +00:00
Aida Andrades Valtueña	b9da0b4f00	Update eva.config ... Update eva.config to send big memory jobs (>700G) to the bigmem queue	2022-03-25 09:36:29 +01:00
Phil Ewels	7d72e8d94b	Merge pull request #356 from b97pla/uppmax_miarka_config ... removed process-specific requirements for sarek, request miarka high-…	2022-03-24 14:33:06 +01:00
b97pla	9a6cdfc21e	removed process-specific requirements for sarek, request miarka high-mem node	2022-03-24 14:25:43 +01:00