Edmund Miller
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0cabf67b61
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feat(demultiplex): Add optimized transfers for bases2fastq
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2022-10-05 17:21:23 -05:00 |
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lquayle88
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a9b62c53e0
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Added global institutional and pipeline configs for sbc_sharc
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2022-09-13 17:02:44 +01:00 |
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SPearce
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5981b643c5
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Updated the sarek pipeline config
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2022-09-01 11:47:12 +01:00 |
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Annick Renevey
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242101db16
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fix extra space
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2022-08-31 14:26:32 +02:00 |
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Annick Renevey
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0851903f66
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include new config in pipeline configs file
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2022-08-31 14:19:07 +02:00 |
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Bruno Grande
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6f0d9e6c43
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Complete check_max() move to global config
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2022-06-23 10:10:28 -07:00 |
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Bruno Grande
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1c7230cb08
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Add Sage-specific Sarek config
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2022-06-23 09:15:42 -07:00 |
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James A. Fellows Yates
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7353fb257d
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Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
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2022-06-03 12:54:47 +02:00 |
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James A. Fellows Yates
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24e165c52d
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Update pipeline/mag.config
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2022-06-03 12:51:47 +02:00 |
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James Fellows Yates
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5a67eba04c
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Add MAG @ EVA profile
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2022-06-03 12:41:08 +02:00 |
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sofstam
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c59149d64c
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Update docs for hasta config
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2022-05-12 10:47:03 +02:00 |
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James Fellows Yates
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e1f780d976
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Add taxprofiler for eVA
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2022-05-12 07:54:17 +01:00 |
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sofstam
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5bc6ed90bd
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Add hasta config for taxprofiler
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2022-05-11 11:13:31 +02:00 |
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James Fellows Yates
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94f8cbcb84
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Add rnaseq pipeline specific config for MPCDF
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2022-03-03 12:20:02 +01:00 |
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Combiz Khozoie
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c5e4ac2025
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Update scflow.config
Removed line corresponding to profile deprecated by change to internal profiles
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2022-02-11 00:25:44 +00:00 |
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Praveen
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b4d5330c0e
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Added rnavar pipeline config for Munin
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2021-12-14 03:52:37 +01:00 |
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James A. Fellows Yates
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73b6b74c69
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Merge pull request #279 from pierrespc/master
Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris
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2021-10-08 19:15:47 +02:00 |
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pierrespc
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e5d4a357c5
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clean doc
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2021-10-04 15:08:01 +02:00 |
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pierrespc
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f6266879d6
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edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet
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2021-09-29 13:47:35 +02:00 |
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pierrespc
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b71df6fe57
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renamed eager pipeline config file
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2021-09-29 13:22:07 +02:00 |
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pierrespc
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9ea3e2096a
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long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes
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2021-09-29 13:11:14 +02:00 |
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Mei Wu
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79a79f7d8d
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added pipeline-specific config
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2021-09-28 10:38:25 +02:00 |
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James Fellows Yates
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59af7f0eee
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Delete SHH profiles due to decommissioning
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2021-08-20 10:15:39 +02:00 |
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ameynert
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17fad9dd15
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Update pipeline/viralrecon.config
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-07-21 12:27:09 +01:00 |
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ameynert
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d9abb7d59f
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Added eddie config to viralrecon
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2021-07-21 12:23:47 +01:00 |
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Edmund Miller
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f9e4ec4a8d
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fix(sysbio): Add sysbio to rnaseq
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2021-06-17 09:18:45 -05:00 |
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Gisela Gabernet
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4e9e5d2c67
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Merge branch 'master' into cfc_sarek
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2021-04-23 16:47:04 +02:00 |
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James A. Fellows Yates
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832edaa450
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Merge branch 'master' into eva
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2021-04-06 17:51:46 +02:00 |
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ameyner2
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da8cf2f207
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Added pipeline-specific config files for rnaseq and sarek
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2021-03-24 10:46:26 +00:00 |
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FriederikeHanssen
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162c212dd4
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Remove extra line
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2021-03-10 11:17:23 +01:00 |
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FriederikeHanssen
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eb9012919c
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Set values for processes with max_mem/max_cpus
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2021-03-10 11:16:18 +01:00 |
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James A. Fellows Yates
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4339e5872c
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Update eager.config
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2021-02-14 18:05:06 +01:00 |
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Combiz Khozoie
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a61992d144
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Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO
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2020-12-18 10:21:26 +00:00 |
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James A. Fellows Yates
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4f991d2c0c
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Update eager.config
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2020-09-04 19:59:27 +02:00 |
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Alexander Peltzer
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f877644059
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Merge branch 'master' into master
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2020-05-29 11:43:47 +02:00 |
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MaxUlysse
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e6f4d58fa6
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update rnafusion munin specific config
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2020-04-28 17:06:04 +02:00 |
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Harshil Patel
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53125368be
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Merge branch 'master' into viralreconupdate
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2020-04-09 18:21:05 +01:00 |
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Harshil Patel
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6834f020cb
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Update viralrecon.config
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2020-04-09 17:49:15 +01:00 |
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MaxUlysse
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5678494e45
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fix typo
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2020-04-09 17:13:19 +02:00 |
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MaxUlysse
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50a44d037b
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better docs and organisation of giles
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2020-04-09 17:02:36 +02:00 |
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Harshil Patel
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4fd9b73cec
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Update pipeline/viralrecon.config
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2020-04-09 13:31:39 +01:00 |
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Harshil Patel
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290d0a2180
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Update pipeline/viralrecon.config
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2020-04-09 13:31:20 +01:00 |
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MaxUlysse
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19316ce852
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add viralrecon specific config
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2020-04-09 13:40:35 +02:00 |
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Daniel Lundin
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e0f9374272
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Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2020-03-31 15:33:19 +02:00 |
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Daniel Lundin
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5a557ed7d5
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Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
|
2020-03-31 15:33:12 +02:00 |
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Daniel Lundin
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79ef94de47
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Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
|
2020-03-31 15:33:04 +02:00 |
|
Daniel Lundin
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c8de9be701
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Adding UPPMAX specific config for ampliseq
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2020-03-31 15:17:24 +02:00 |
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Adrian Larkeryd
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02d8b81af4
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adding icr_davros as profiles
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2020-03-04 16:02:11 +00:00 |
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MaxUlysse
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aa905cd645
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add UPPMAX specific sarek config
|
2020-02-20 17:14:18 +01:00 |
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Alexander Peltzer
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a6d08ed646
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Adjust custom pipeline config for ampliseq on BINAC
|
2019-12-11 16:09:44 +01:00 |
|